View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_13 (Length: 368)
Name: NF6009_low_13
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 7424035 - 7423684
Alignment:
| Q |
1 |
cacgatgaaactctatattaccaaagttctcttcacctataaatcaaaagtttaaaacaaaatagaattggattgtataagtaaagtacggatgagagaa |
100 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7424035 |
cacgatcaaactctacattaccaaagttctcttcacctataaatcaaaagtttaaaataaaatagaattggattgtata-gtaaagtacggatgagagaa |
7423937 |
T |
|
| Q |
101 |
cgtgcacttttgactcctgttatttggtctgtctgcttatattattattggaaccaattattagtggtcttaaataaattactacatttttggggcgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423936 |
cgtgcacttttgactcctgttatttggtctgtctgcttatattattattggaaccaattattagtggtcttaaataaattactacatttttggggcgctt |
7423837 |
T |
|
| Q |
201 |
cacgtgctacatgaataattaaccatagactttttattatttcatctcattgttatgatgtcatttcattttgagtcctgtggaaagtgattactaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7423836 |
cacgtgctacatgaataattaaccatagactttttattatctcatttcattgttatgatgtcatttcattttgagtcctgtggaaagtgattagtaactg |
7423737 |
T |
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| Q |
301 |
tttactttgtagtattgcttaaataaagtaaatgtattcgttttgatcaagtt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423736 |
tttactttgtagtattgcttaaataaagtaaatgtattcgttttgatcaagtt |
7423684 |
T |
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