View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_16 (Length: 331)
Name: NF6009_low_16
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 32898661 - 32898865
Alignment:
| Q |
21 |
ccagggtcctcttcgacttgttttttggctttggtaaaaatataacgttgactttgatattcaaatttttccttggattcttaaatggttcaagtggacc |
120 |
Q |
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| T |
32898661 |
ccagggtcctcttcaacttgttttttggctttggtaaaaatataacgttgactttgatattcaaatttttccttggattcttaaatggttcaagtggacc |
32898760 |
T |
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| Q |
121 |
tgggagggtgannnnnnnnaaacctctttcgtttaagtttaaatttgtatcattttatggttatatgttattctaataagtaactaatagcttctactaa |
220 |
Q |
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| T |
32898761 |
ggggagggtgattttttttaaacctctttcgtttaagtttaaatttgtatcattttatggttatatgttattctaataagtaactaatagcttctactaa |
32898860 |
T |
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| Q |
221 |
tatct |
225 |
Q |
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||||| |
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| T |
32898861 |
tatct |
32898865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 32898934 - 32899025
Alignment:
| Q |
231 |
taaacatgtatgcctttgtaacctttgtctcatataattaattcaaatttattgttattagttgaaagtgtggtctgatttttggtctgtgc |
322 |
Q |
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| T |
32898934 |
taaacatgtatgcctctgtaacctttgtctcatataattaattcaaatttattgttattagttgaaagtgtgatctgatttttggtctgtgc |
32899025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 36443053 - 36443009
Alignment:
| Q |
152 |
tttaagtttaaatttgtatcattttatggttatatgttattctaa |
196 |
Q |
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| T |
36443053 |
tttaagtttaaaattttgtcattttatggttatgtgttattctaa |
36443009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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