View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_19 (Length: 319)
Name: NF6009_low_19
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 306
Target Start/End: Complemental strand, 38220380 - 38220096
Alignment:
| Q |
21 |
ctaggaccgtccgatcttgaaccaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220380 |
ctaggaccgtccgatcttgaaccaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaat |
38220281 |
T |
|
| Q |
121 |
ctcgatttaactctgaaatgtaacactaatccagtgttgggtattatatagtaaagcaatatggattttaattgtttcaggttgagtatcaagttgaatc |
220 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
38220280 |
ctcgatttaactctgaaatgtaacactaatccaatgttgggtattatatagtaaagcaatatgga-tttctttgtttcaggttgagtatcaagttgaatc |
38220182 |
T |
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| Q |
221 |
atgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggctatgtgatct |
306 |
Q |
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| T |
38220181 |
atgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatct |
38220096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 42 - 306
Target Start/End: Complemental strand, 38243211 - 38242951
Alignment:
| Q |
42 |
ccaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaatctcgatttaactctgaaatgt |
141 |
Q |
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|||||||||| || |||||||||||||||||||||| | ||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
38243211 |
ccaacagtctgtgctgattgcgtgaatgtagagtctctcggctgctaggaatccaaattagtaatttatttgtctcaatctcgatttaactcttaaatgt |
38243112 |
T |
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| Q |
142 |
aacactaatccagtgttgggtattatatagtaaagcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataagga |
241 |
Q |
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| T |
38243111 |
aacactagcccattgttgggtatcatagtg---agcaacatggatttct-ttgtttcagattgagtatcaagttgaatcttgcagcacagaccataggga |
38243016 |
T |
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| Q |
242 |
tggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggctatgtgatct |
306 |
Q |
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| |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
38243015 |
ggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatct |
38242951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 38238090 - 38237976
Alignment:
| Q |
192 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactg |
291 |
Q |
| |
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||||||||| |||||||||||||||||| |||| |||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
38238090 |
ttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactg |
38237991 |
T |
|
| Q |
292 |
gtggctatgtgatct |
306 |
Q |
| |
|
|||||||| |||||| |
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| T |
38237990 |
gtggctatatgatct |
38237976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 38226556 - 38226437
Alignment:
| Q |
187 |
tttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttca |
286 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| ||| |||| ||||||| || |||||||||||||| |||||||||||| |||||||||| | || |
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| T |
38226556 |
tttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactaca |
38226457 |
T |
|
| Q |
287 |
aactggtggctatgtgatct |
306 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
38226456 |
aactggtggctatgtgatct |
38226437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 38214187 - 38214063
Alignment:
| Q |
175 |
agcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataag |
274 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| || |||||| | ||||| ||||||||||||||||||||| ||||| ||| |
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| T |
38214187 |
agcaacatggatttt--ttgtttcaggttgagtatcaagttgaatcttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgaggacaag |
38214090 |
T |
|
| Q |
275 |
tctcccatttcaaactggtggctatgt |
301 |
Q |
| |
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||||||| | ||||||||||||||||| |
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| T |
38214089 |
tctcccactacaaactggtggctatgt |
38214063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 38253418 - 38253304
Alignment:
| Q |
192 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactg |
291 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||| || | | || ||||| |||||||| ||||||||||| || |||| |||||||||| | ||||| | |
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| T |
38253418 |
ttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccg |
38253319 |
T |
|
| Q |
292 |
gtggctatgtgatct |
306 |
Q |
| |
|
||||||||||||||| |
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| T |
38253318 |
gtggctatgtgatct |
38253304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 38248264 - 38248176
Alignment:
| Q |
192 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca |
281 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||| | || |||| |||||||| |||||||||||||| |||| |||||||||| |
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| T |
38248264 |
ttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
38248176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 17454647 - 17454528
Alignment:
| Q |
192 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactg |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
17454647 |
ttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactg |
17454548 |
T |
|
| Q |
292 |
gtggctatgtgatctgtgct |
311 |
Q |
| |
|
||||||||||||||| |||| |
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| T |
17454547 |
gtggctatgtgatctatgct |
17454528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 17433568 - 17433449
Alignment:
| Q |
192 |
ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactg |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| || | ||||| |||| | |||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
17433568 |
ttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactg |
17433469 |
T |
|
| Q |
292 |
gtggctatgtgatctgtgct |
311 |
Q |
| |
|
|||| |||||||||| |||| |
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|
| T |
17433468 |
gtggatatgtgatctatgct |
17433449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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