View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6009_low_2 (Length: 675)

Name: NF6009_low_2
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6009_low_2
NF6009_low_2
[»] chr4 (15 HSPs)
chr4 (1-514)||(53272504-53273016)
chr4 (85-193)||(7808975-7809083)
chr4 (85-220)||(16654128-16654266)
chr4 (85-193)||(7820926-7821034)
chr4 (85-193)||(42315859-42315967)
chr4 (85-192)||(25936903-25937009)
chr4 (85-193)||(44930590-44930694)
chr4 (91-193)||(8583008-8583110)
chr4 (87-268)||(10600643-10600816)
chr4 (85-193)||(42217449-42217556)
chr4 (137-192)||(38234589-38234644)
chr4 (79-120)||(47686871-47686912)
chr4 (79-120)||(54510610-54510651)
chr4 (89-193)||(3434832-3434936)
chr4 (137-193)||(29649183-29649239)
[»] chr8 (20 HSPs)
chr8 (88-514)||(14062146-14062574)
chr8 (84-284)||(4302111-4302314)
chr8 (88-274)||(9209805-9209992)
chr8 (75-193)||(9458484-9458602)
chr8 (79-193)||(40264270-40264384)
chr8 (85-193)||(4656053-4656161)
chr8 (85-193)||(7149011-7149119)
chr8 (88-193)||(10795379-10795484)
chr8 (84-256)||(38805924-38806097)
chr8 (79-192)||(28620662-28620774)
chr8 (91-193)||(43604382-43604484)
chr8 (137-193)||(2113765-2113821)
chr8 (137-193)||(5266794-5266850)
chr8 (137-193)||(39371218-39371274)
chr8 (85-193)||(41385871-41385979)
chr8 (137-193)||(43489897-43489953)
chr8 (90-193)||(42275921-42276024)
chr8 (79-149)||(37566516-37566586)
chr8 (137-193)||(16365262-16365318)
chr8 (85-149)||(30381823-30381887)
[»] chr1 (18 HSPs)
chr1 (86-495)||(4289576-4289976)
chr1 (85-269)||(28038335-28038523)
chr1 (88-268)||(1923373-1923555)
chr1 (88-193)||(51825965-51826070)
chr1 (85-193)||(52706365-52706473)
chr1 (372-430)||(20982175-20982233)
chr1 (85-193)||(45319452-45319560)
chr1 (85-193)||(14389399-14389507)
chr1 (79-193)||(28386553-28386668)
chr1 (134-193)||(39758860-39758919)
chr1 (134-193)||(39764214-39764273)
chr1 (88-193)||(43556668-43556772)
chr1 (86-193)||(45273546-45273653)
chr1 (87-193)||(45535734-45535840)
chr1 (410-500)||(28038602-28038692)
chr1 (85-149)||(10897662-10897727)
chr1 (92-192)||(19894802-19894902)
chr1 (85-149)||(36403105-36403169)
[»] chr3 (28 HSPs)
chr3 (85-269)||(34290168-34290355)
chr3 (85-242)||(24573434-24573593)
chr3 (85-284)||(36786802-36787004)
chr3 (85-222)||(44040902-44041042)
chr3 (86-246)||(14978463-14978628)
chr3 (79-193)||(36054005-36054119)
chr3 (86-192)||(45214086-45214192)
chr3 (372-500)||(12102609-12102736)
chr3 (79-193)||(2124700-2124814)
chr3 (85-193)||(30589822-30589930)
chr3 (79-193)||(26556844-26556958)
chr3 (85-193)||(23360554-23360662)
chr3 (85-193)||(23367394-23367502)
chr3 (85-193)||(24149838-24149946)
chr3 (86-193)||(46223308-46223415)
chr3 (85-193)||(38628821-38628929)
chr3 (85-193)||(23697948-23698057)
chr3 (85-193)||(23716403-23716512)
chr3 (85-193)||(23734859-23734968)
chr3 (85-161)||(35347091-35347167)
chr3 (137-193)||(50899499-50899555)
chr3 (462-513)||(34290404-34290455)
chr3 (85-192)||(46251201-46251307)
chr3 (86-152)||(35731873-35731939)
chr3 (202-255)||(24573649-24573702)
chr3 (85-149)||(27593967-27594032)
chr3 (84-120)||(41632193-41632229)
chr3 (137-193)||(52617140-52617196)
[»] chr2 (23 HSPs)
chr2 (88-268)||(34027781-34027963)
chr2 (87-193)||(38821254-38821360)
chr2 (127-268)||(20156624-20156767)
chr2 (85-192)||(2289262-2289369)
chr2 (79-193)||(29941866-29941980)
chr2 (79-193)||(7486952-7487066)
chr2 (88-192)||(27979875-27979979)
chr2 (88-192)||(28066405-28066509)
chr2 (85-193)||(45547892-45548000)
chr2 (81-149)||(12135555-12135623)
chr2 (85-192)||(15283599-15283707)
chr2 (81-149)||(24935288-24935356)
chr2 (81-149)||(25683981-25684049)
chr2 (202-255)||(2086568-2086621)
chr2 (85-149)||(24192664-24192728)
chr2 (138-192)||(45497490-45497544)
chr2 (138-192)||(45505232-45505286)
chr2 (202-255)||(38821565-38821618)
chr2 (95-143)||(2086672-2086720)
chr2 (137-193)||(6288609-6288665)
chr2 (85-193)||(25289140-25289248)
chr2 (137-193)||(33136579-33136635)
chr2 (96-192)||(43023504-43023600)
[»] chr7 (22 HSPs)
chr7 (85-269)||(46197106-46197291)
chr7 (341-492)||(41061013-41061168)
chr7 (372-511)||(11042266-11042406)
chr7 (155-274)||(11042398-11042519)
chr7 (79-193)||(152838-152952)
chr7 (127-268)||(40098154-40098297)
chr7 (85-193)||(12252387-12252495)
chr7 (87-246)||(42677250-42677412)
chr7 (87-193)||(27417651-27417757)
chr7 (85-193)||(30111770-30111878)
chr7 (85-192)||(34114542-34114649)
chr7 (85-193)||(43056689-43056797)
chr7 (85-193)||(47912525-47912633)
chr7 (202-255)||(25295354-25295407)
chr7 (85-193)||(33475514-33475622)
chr7 (86-132)||(11042522-11042568)
chr7 (81-147)||(32631550-32631616)
chr7 (139-192)||(12893165-12893218)
chr7 (85-149)||(39300427-39300492)
chr7 (137-193)||(7994141-7994197)
chr7 (137-193)||(9881453-9881509)
chr7 (137-193)||(35089150-35089206)
[»] chr6 (7 HSPs)
chr6 (79-246)||(10262801-10262967)
chr6 (85-255)||(10008376-10008538)
chr6 (80-193)||(29864748-29864861)
chr6 (85-193)||(3109351-3109459)
chr6 (85-193)||(6475744-6475852)
chr6 (81-149)||(35165661-35165729)
chr6 (137-188)||(5958037-5958088)
[»] scaffold0472 (1 HSPs)
scaffold0472 (79-246)||(933-1103)
[»] scaffold0016 (1 HSPs)
scaffold0016 (79-193)||(80788-80902)
[»] scaffold0237 (1 HSPs)
scaffold0237 (80-193)||(20443-20556)
[»] scaffold0153 (1 HSPs)
scaffold0153 (85-193)||(33826-33934)
[»] chr5 (8 HSPs)
chr5 (85-192)||(2275271-2275377)
chr5 (79-193)||(11632681-11632795)
chr5 (88-193)||(10553713-10553818)
chr5 (85-193)||(40411394-40411503)
chr5 (88-193)||(13949805-13949910)
chr5 (85-186)||(10553440-10553541)
chr5 (85-120)||(6827953-6827988)
chr5 (88-149)||(6901360-6901421)
[»] scaffold0202 (1 HSPs)
scaffold0202 (88-192)||(15629-15733)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 53273016 - 53272504
Alignment:
Q  1 actttcaattaatctcaacagctgtttcaatcaaatggtattttcttttttcgctccattagtaacggaaaacaagaattaggagggtgtattggattga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||     
T  53273016 actttcaattaatctcaacagttgtttcaatcaaatggtattttctttttgcgctccattagtaacggaaaacaagaattaggggggtgtattggattgg 53272917  T
Q  101 gattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagacttttaaaatga 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||| |    
T  53272916 gattttaagagattattttggaaaacaaaattctgcagattttaaaagactttgtgtgattctattgattttatgagattttaaaagac-tttaaaataa 53272818  T
Q  201 cttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatggattcataagatttgagagattttgaannn 300  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||       
T  53272817 cttttacaatcaggattttgaacacaagatttcaatggatttataagacagatttgttaagatttcaatggatttgtaagatttgagagattttgaattt 53272718  T
Q  301 nnnnaattc-ctcttgtcattttaaagatcttaagatagactttaatggatttataagacaggttttaaacacaatagactttatgaaattttaatattt 399  Q
        ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  53272717 ttttaattcactcttgtcattttaaagatcttaagacagactttaatggatttataagacagattttaaacacaatagacttgatgaaattttaatattt 53272618  T
Q  400 gataggatcacatggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaatatggactttactaataataattataat 499  Q
     | ||||||||||||||||||||||||||||||||||||| ||||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  53272617 aagaggatcacatggattcttaagaaaaattcaaaatgacaagagtgaatg-aaaaaattacgaacttaaaatatggactttactaataataattataat 53272519  T
Q  500 atttacaagttactc 514  Q
    |||||||||||||||    
T  53272518 atttacaagttactc 53272504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 7809083 - 7808975
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| |  ||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| |||||||||||    
T  7809083 gggtgtattggattgagattttaaaagactggtttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtaggattttaa 7808984  T
Q  185 aagactttt 193  Q
    |||||||||    
T  7808983 aagactttt 7808975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 16654266 - 16654128
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||| |||||||||||||| | | |||||| ||||| ||||| ||| ||||||||||||| || ||| |||| || ||| ||| | | |||||||    
T  16654266 gggtgtattagattgagattttaataaactatttttgaaaacaaaatcctgaagattttaaaagattttgtgagattatactgactttgttgaattttaa 16654167  T
Q  185 aagac--ttttaaaatgac-ttttacaatcaggattttg 220  Q
    |||||  |||| ||||| | |||||||||||||||||||    
T  16654166 aagactttttttaaatgtctttttacaatcaggattttg 16654128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 7821034 - 7820926
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattct-gcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||||||||||||||||| ||| |  ||||  | | |||||||| | |||||||||||||||| ||  |||| |||||||||| ||||||||||    
T  7821034 gggtgtattggattgagattttaaaagactgatttgataga-aaaattcttgaagattttaaaagactttgttggattgtattgattttgtaggatttta 7820936  T
Q  184 aaagactttt 193  Q
    ||||||||||    
T  7820935 aaagactttt 7820926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 42315967 - 42315859
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  42315967 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 42315868  T
Q  185 aagactttt 193  Q
    || ||||||    
T  42315867 aacactttt 42315859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 25937009 - 25936903
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||| ||||||||||| |  |||| |||||| ||| |||| | |  |||||||||||||||| |||| ||| |||||||||| || ||||||||    
T  25937009 gggtgtattgaattgagattttgaaggattgttttggtaaaaaaaact-taaagattttaaaagactttgtgtaattgtattgattttttaagattttaa 25936911  T
Q  185 aagacttt 192  Q
    || |||||    
T  25936910 aatacttt 25936903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 44930694 - 44930590
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  ||| |||||  |  ||||||||||||||||    || || |||||||||||| | |||||||    
T  44930694 gggtgtattggattgagattttaaaagactgttttgataaaaaaaatcttaaagattttaaaagactt----tgtttgtattgattttatggaattttaa 44930599  T
Q  185 aagactttt 193  Q
    |||||||||    
T  44930598 aagactttt 44930590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 8583008 - 8583110
Alignment:
Q  91 attggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagact 190  Q
    |||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||||||||||| |    
T  8583008 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaaaagatt 8583107  T
Q  191 ttt 193  Q
    |||    
T  8583108 ttt 8583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 268
Target Start/End: Original strand, 10600643 - 10600816
Alignment:
Q  87 gtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    ||||||||||| |||||||||| ||| | |||||| ||||||||||||| ||||||| |||           ||| |||||| ||| | |||||||||||    
T  10600643 gtgtattggatcgagattttaaaagactgttttggcaaataaaattctgaagatttttaaa----------tattatattgactttgttggattttaaaa 10600732  T
Q  187 ga--cttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaa 268  Q
    ||   |||| |||| || ||||||||| |||||||| |||||||||| | ||||||||||||| ||| |||| ||||| ||||||    
T  10600733 gatttttttcaaattactttttacaattaggattttaaacacatgattttaatggatttataatacaaattt-ttaagttttcaa 10600816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 42217449 - 42217556
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||| |||||||||||||| ||| | |||||  | | |||||  || |||||||||| ||||| ||  |||| |||||||||| | |||||||||    
T  42217449 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaa-gactttgttggattgtattgattttgtgggattttaa 42217547  T
Q  185 aagactttt 193  Q
    |||||||||    
T  42217548 aagactttt 42217556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 38234644 - 38234589
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagacttt 192  Q
    |||||||||||||||| ||| |||| |||||||| | || ||||||||||||||||    
T  38234644 agattttaaaagactttgtgggattgtattgattctgtaagattttaaaagacttt 38234589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 47686912 - 47686871
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttg 120  Q
    ||||| |||||||||||||||||||||||| ||| |||||||    
T  47686912 ttaggggggtgtattggattgagattttaaaagactattttg 47686871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 54510651 - 54510610
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttg 120  Q
    ||||| |||||||||||||||||||||||| ||| |||||||    
T  54510651 ttaggggggtgtattggattgagattttaaaagactattttg 54510610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 3434832 - 3434936
Alignment:
Q  89 gtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaaga 188  Q
    |||||| ||||||||||||| ||| ||||||   | | |||||  || |||||||||||||||| ||  |||| |||||||||| | | |||||||||||    
T  3434832 gtattgaattgagattttaaaagactattttaatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggaattttaaaaga 3434931  T
Q  189 ctttt 193  Q
     ||||    
T  3434932 ttttt 3434936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 29649183 - 29649239
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||  ||| |||| |||||||| |||  |||||||||||||||||    
T  29649183 agattttaaaagactgtgtgagattgtattgattctatgagattttaaaagactttt 29649239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 88 - 514
Target Start/End: Complemental strand, 14062574 - 14062146
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    |||||||||||  |||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  14062574 tgtattggattaggattttaagagattattttgaaaaacaaaatcctgcagattttaaaagactttgtgtgattctattgattttatgggattttaaaag 14062475  T
Q  188 acttttaaaatga-cttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatggattcataagatttga 286  Q
    |||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  14062474 acttctaaaatgaccttttacaatcaggattttgaacacaagatttcaatggatttataagacagatttgttaagatttcaatggatttataagatttga 14062375  T
Q  287 gagattttgaannnnnnnaattc-ctcttgtcattttaaagatcttaagatagactttaatggatttataagacaggttttaaacacaatagactttatg 385  Q
    |||||||||||        |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||    
T  14062374 gagattttgaatttttttcattcactcttgtcattttaaagatcttaagacaaattttaatggatttataagacagattttaaacacaatagactttatg 14062275  T
Q  386 aaattttaatatttgataggatcacatggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaatatggactttacta 485  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||       |||| ||||||||||||| | |||||||    
T  14062274 aaattttaatatttgagaggatcacatggattcttaagaaaaattcaaaatgacaagactgaatgaaaaaaattacgaacttaaaatatgaaatttacta 14062175  T
Q  486 ataataattataatatttacaagttactc 514  Q
    |||||||||||||||||||||||||||||    
T  14062174 ataataattataatatttacaagttactc 14062146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 84 - 284
Target Start/End: Original strand, 4302111 - 4302314
Alignment:
Q  84 agggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    ||||||||||||||||||| ||||| ||| |||||| ||||||||||| ||  ||||||||||||| || ||| |||| |||||| ||| | ||||||||    
T  4302111 agggtgtattggattgagaatttaaaagactattttagaaaataaaatgctaaagattttaaaagattttgtgagattatattgactttgttggatttta 4302210  T
Q  184 aaagac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatgga-ttcataa 279  Q
    ||||||  |||| ||||||| ||||||||| | ||||||||||||||||| | ||||||||||||| ||| |||| |||||||||||| ||| ||||| |    
T  4302211 aaagacttttttcaaatgactttttacaattaagattttgaacacatgattttaatggatttataatacaaattt-ttaagatttcaacggacttcatga 4302309  T
Q  280 gattt 284  Q
    |||||    
T  4302310 gattt 4302314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 9209992 - 9209805
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||| ||| ||||||||| ||| |||||||| ||| ||||| ||| ||||||||||||| || ||| |||| |||||||||| | ||||||||||||    
T  9209992 tgtattgaattaagattttaaaagactattttggcaaacaaaatcctgaagattttaaaagattttgtgagattatattgattttgttggattttaaaag 9209893  T
Q  188 ac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatggatt 274  Q
    ||  |||| ||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||| |||  |||||||||||| |||||    
T  9209892 acttttttcaaatgactttttacaatcaggattttgaacacatgattttattggatttataatacaaatt--ttaagatttcaacggatt 9209805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 9458602 - 9458484
Alignment:
Q  75 agaattaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttat 174  Q
    ||||||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| |    
T  9458602 agaattaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgt 9458503  T
Q  175 aggattttaaaagactttt 193  Q
     ||||||||||||||||||    
T  9458502 gggattttaaaagactttt 9458484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 40264270 - 40264384
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  40264270 ttaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 40264369  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  40264370 ttttaaaagactttt 40264384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 4656161 - 4656053
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  4656161 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 4656062  T
Q  185 aagactttt 193  Q
    |||||||||    
T  4656061 aagactttt 4656053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 7149119 - 7149011
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  7149119 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 7149020  T
Q  185 aagactttt 193  Q
    |||||||||    
T  7149019 aagactttt 7149011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 10795379 - 10795484
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||||||||||    
T  10795379 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaaaag 10795478  T
Q  188 actttt 193  Q
    ||||||    
T  10795479 actttt 10795484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 256
Target Start/End: Original strand, 38805924 - 38806097
Alignment:
Q  84 agggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||| |||||||||||||||||||| ||| |||||||| | | ||| |  |  ||||||||||||||||  |  |||| |||||||| |||  |||||||    
T  38805924 agggggtattggattgagattttaaaagactattttggtagaaaaagtctttgagattttaaaagactttttaggattgtattgattctatgagatttta 38806023  T
Q  184 aaagactttta-aaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataaaacagatttg 256  Q
    ||||| ||||  ||| ||||||| ||||||| |||||  ||||||  || | |||||||||||||||||||||||    
T  38806024 aaagatttttttaaaagactttttacaatcaagatttataacacaa-attttaatggatttataaaacagatttg 38806097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 28620774 - 28620662
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||| ||||||||||| | ||||| |||||| ||| |||||  |  ||||||||||| | || |||||||| |||||||||| |  ||    
T  28620774 ttaggggggtgtattgaattgagattttgaaagattgttttggcaaa-aaaatcttaaagattttaaaaaattttgtgtgattgtattgattttttgaga 28620676  T
Q  179 ttttaaaagacttt 192  Q
    ||||||||||||||    
T  28620675 ttttaaaagacttt 28620662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 43604382 - 43604484
Alignment:
Q  91 attggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagact 190  Q
    |||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||||||||| |||    
T  43604382 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaaaaaact 43604481  T
Q  191 ttt 193  Q
    |||    
T  43604482 ttt 43604484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 2113821 - 2113765
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  2113821 agattttaaaagactttgttggattgtattgattttgtgggattttaaaagactttt 2113765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 5266794 - 5266850
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||| |||| |||||||||| | ||||||||||||| ||||    
T  5266794 agattttaaaagactttgtgagattatattgattttgtgggattttaaaagaatttt 5266850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 39371218 - 39371274
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  39371218 agattttaaaagactttgttggattgtattgattttgtgggattttaaaagactttt 39371274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 41385871 - 41385979
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |   || || |||||||||||||||| ||  |||| |||| ||||| | |||||||||    
T  41385871 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattaattttgtgggattttaa 41385970  T
Q  185 aagactttt 193  Q
    |||||||||    
T  41385971 aagactttt 41385979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 43489953 - 43489897
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  43489953 agattttaaaagactttgttggattgtattgattttgtgggattttaaaagactttt 43489897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 42276024 - 42275921
Alignment:
Q  90 tattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagac 189  Q
    |||| |||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | | ||||||||||||    
T  42276024 tattagattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggaattttaaaagac 42275925  T
Q  190 tttt 193  Q
    ||||    
T  42275924 tttt 42275921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 37566516 - 37566586
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    ||||| |||||||||||||||||||||||| ||| |||||||  ||| ||| |  || |||||||||||||    
T  37566516 ttaggggggtgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaaga 37566586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 16365318 - 16365262
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||| |||| |||||||| | |  |||||||||||||||||    
T  16365318 agattttaaaagactttgtgcgattgtattgattctgtgagattttaaaagactttt 16365262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 30381823 - 30381887
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| |||||||  ||| ||| |  || |||||||||||||    
T  30381823 gggtgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaaga 30381887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 86 - 495
Target Start/End: Complemental strand, 4289976 - 4289576
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaa 185  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||| |||| |||||||||||| ||| ||||||||||    
T  4289976 ggtgtattggattgggattttaagagattattttggaaaacaaaatcctgtatattttaaaagactttgtgtaattctattgattatatgggattttaaa 4289877  T
Q  186 agacttttaaaatgacttttacaatcaggatttt-gaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatggattcataagattt 284  Q
     |||||||           |||||| |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  4289876 tgactttt-----------tacaattaggatttttgaacacaagatttcaatggatttataagacagatttgttaagatttcaatggatttataagattt 4289788  T
Q  285 gagagattttgaannnnnnnaattc-ctcttgtcattttaaagatcttaagatagactttaatggatttataagacaggttttaaacacaatagacttta 383  Q
    ||||||||||||         |||| |||||||||||||||||||||||  | ||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  4289787 gagagattttgattttttttcattcactcttgtcattttaaagatcttagcacagattttaatggatttataagacagattttaaacacaataaacttta 4289688  T
Q  384 tgaaattttaatatttgataggatcacatggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaatatggactttac 483  Q
    | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||       |||| ||||||||||||||| |||||    
T  4289687 taaaattttaatatttgagaggatcacatgaattcttaagaaaaattcaaaatgacaagagtgaatgaaaaaaattacgaacttaaaatatggaatttac 4289588  T
Q  484 taataataatta 495  Q
    ||||||||||||    
T  4289587 taataataatta 4289576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 28038335 - 28038523
Alignment:
Q  85 gggtgtattggattgagattttaaga-gattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||| ||||||||||||| | ||||||||||| ||| |||||||| ||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  28038335 gggtgtattgaattgagattttaaaaagattattttggcaaacaaaattctacagattttaaaagactttgtgaaattatattgattttataggatttta 28038434  T
Q  184 aaagac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaat 269  Q
    ||||||  |||| ||||||| |||||||||||||||||| |||||| ||| | ||||||||||||| ||| |||||  || ||||||||    
T  28038435 aaagactttttttaaatgactttttacaatcaggattttaaacacaagattttaatggatttataacacatatttgcaaaaatttcaat 28038523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 88 - 268
Target Start/End: Original strand, 1923373 - 1923555
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||  || ||||||||||||| || ||| |||| |||||| ||| | ||||||||||||    
T  1923373 tgtattggattgagattttaaaagattattttggcaaacaaaatcttgaagattttaaaagattttgtgagattatattgactttgttggattttaaaag 1923472  T
Q  188 ac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaa 268  Q
    ||  |||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||| ||| |||| ||||||||||||    
T  1923473 acttttttcaaatgactttttacaatcaggattttgaacacataattttaatggatttataatacaaattt-ttaagatttcaa 1923555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 51825965 - 51826070
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||| ||| | ||||| |||||| ||| |||||  |  |||||||||||||||| |||||||| |||||||||| | | ||||||||||    
T  51825965 tgtattggattgagagtttgaaagattgttttggcaaaaaaaatcttaaagattttaaaagactttgtgtgattgtattgattttgtggcattttaaaag 51826064  T
Q  188 actttt 193  Q
    ||||||    
T  51826065 actttt 51826070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 52706473 - 52706365
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  52706473 gggtgtattggattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 52706374  T
Q  185 aagactttt 193  Q
    |||||||||    
T  52706373 aagactttt 52706365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 20982175 - 20982233
Alignment:
Q  372 caatagactttatgaaattttaatatttgataggatcacatggattcttaagaaaaatt 430  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  20982175 caatagagtttatgaaattttaagatttgagaggatcacatggatttttaagaaaaatt 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 45319560 - 45319452
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| ||||||||||   |||||||||    
T  45319560 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgcgggattttaa 45319461  T
Q  185 aagactttt 193  Q
    |||||||||    
T  45319460 aagactttt 45319452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 14389507 - 14389399
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |   || || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  14389507 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 14389408  T
Q  185 aagactttt 193  Q
    |||||||||    
T  14389407 aagactttt 14389399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 28386553 - 28386668
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgca-gattttaaaagacttcgtgtgattctattgattttatagg 177  Q
    ||||| ||||||||||||||  |||||||| ||| ||||||   ||| |||| |||  | ||||||||||||||  ||| ||||||||||||||| |  |    
T  28386553 ttaggggggtgtattggattaggattttaaaagactattttaataaaaaaaagtctttaagattttaaaagactgtgtgagattctattgattttgtgag 28386652  T
Q  178 attttaaaagactttt 193  Q
    ||||||||||||||||    
T  28386653 attttaaaagactttt 28386668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 39758919 - 39758860
Alignment:
Q  134 tgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    ||||||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  39758919 tgcagattttaaaagactttgttggattgtattgattttgtgggattttaaaagactttt 39758860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 39764273 - 39764214
Alignment:
Q  134 tgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    ||||||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  39764273 tgcagattttaaaagactttgttggattgtattgattttgtgggattttaaaagactttt 39764214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 43556772 - 43556668
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaat-tctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    ||||||||||||||||| | | ||| |||||||| ||||||||| || | ||||||||||||||||| |  |||| |||  ||||| | |||||||||||    
T  43556772 tgtattggattgagattgtgaaagactattttggcaaataaaatctcagaagattttaaaagacttcataagattgtat--attttgtgggattttaaaa 43556675  T
Q  187 gactttt 193  Q
    |||||||    
T  43556674 gactttt 43556668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 45273653 - 45273546
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaa 185  Q
    |||||||||||||  |||||||| ||||||||||   ||| ||| || |  |||||||||||||||   || |||| ||||||||||||  |||||||||    
T  45273653 ggtgtattggattaggattttaaaagattattttaataaaaaaagtttttaagattttaaaagactatatgagattatattgattttatgagattttaaa 45273554  T
Q  186 agactttt 193  Q
    ||||||||    
T  45273553 agactttt 45273546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 45535840 - 45535734
Alignment:
Q  87 gtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    |||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||| |||| || ||  |||| |||||||||| | |||||||||||    
T  45535840 gtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttagaagattttgttggattgtattgattttgtgggattttaaaa 45535741  T
Q  187 gactttt 193  Q
    |||||||    
T  45535740 gactttt 45535734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 500
Target Start/End: Original strand, 28038602 - 28038692
Alignment:
Q  410 catggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaatatggactttactaataataattataata 500  Q
    ||||||||||||||||||| |||||||||| ||||||||||       |||  |||||| ||||| || || || ||||||||||||||||    
T  28038602 catggattcttaagaaaaaatcaaaatgacaagagtgaatgaaaaaaattatgaacttataatatagaattgaccaataataattataata 28038692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 10897727 - 10897662
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttg-gaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| ||||||| ||||| ||| |  || |||||||||||||    
T  10897727 gggtgtattggattgagattttaaaagactattttgagaaaaaaaagtcttgaagattttaaaaga 10897662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 19894902 - 19894802
Alignment:
Q  92 ttggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagactt 191  Q
    |||||||| |||||||| ||  |||||||| ||| | |||  |  ||||||||||||| || |||||||| |||||||||| | | ||||||||| ||||    
T  19894902 ttggattgggattttaaaagtctattttggcaaaaagaatcttaaagattttaaaagattttgtgtgattatattgattttgtggaattttaaaaaactt 19894803  T
Q  192 t 192  Q
    |    
T  19894802 t 19894802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 36403169 - 36403105
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| |||||||  ||| ||| |  || |||||||||||||    
T  36403169 gggtgtattggattgagattttaaaagactattttgacaaaaaaagtcttgaagattttaaaaga 36403105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 34290168 - 34290355
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  34290168 gggtgtattggattgggatttcaaaagattattttggcaaataaaatcctgcagattttaaaagactttgtgtgattgtattgattttatgggattttaa 34290267  T
Q  185 aagac--ttttaaaatga-cttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaat 269  Q
    |||||  |||||||||||  |||||||||||| ||||| |||||| ||| | ||||||||||||| |||||||||| |||||||||||    
T  34290268 aagacttttttaaaatgattttttacaatcagaatttttaacacaagattttaatggatttataacacagatttgtaaagatttcaat 34290355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 24573434 - 24573593
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||| |||||||| |||||||||||| ||| ||||| ||| |||||||||||||||| |||  ||| |||| |||||   ||||||||     
T  24573434 gggtgtattggattgggattttaaaagattattttggcaaacaaaatcctgaagattttaaaagactttgtgaaattatattaattttgatggattttag 24573533  T
Q  185 aagac-ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggattt 242  Q
    ||||| ||||| |||||| ||||||||| ||||||||||| ||||||| | |||||||||    
T  24573534 aagactttttataatgactttttacaattaggattttgaagacatgattttaatggattt 24573593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 36787004 - 36786802
Alignment:
Q  85 gggtgtattggattgagat---tttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattt 181  Q
    ||||||||||||||||||    ||||| ||| |||||||||||| |||||| || ||||||||||||   | ||| |||| |||||| ||| | ||||||    
T  36787004 gggtgtattggattgagaaatatttaaaagactattttggaaaacaaaattttgaagattttaaaag---ttgtgagattatattgactttgttggattt 36786908  T
Q  182 taaaagact--tttaaaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaatgga-ttcat 277  Q
    |||||||||  ||| ||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| ||| |||| |||||||||||| ||| |||||    
T  36786907 taaaagactattttcaaatgactttttacaatcaggattttgaatacatgattttaatggatttataatacaaattt-ttaagatttcaacggacttcat 36786809  T
Q  278 aagattt 284  Q
     ||||||    
T  36786808 gagattt 36786802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 44040902 - 44041042
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||| ||||||||||||| |||||||  ||| || |||||| ||||||||||||| || | | |||| |||||||||| | ||||||||     
T  44040902 gggtgtattggattaagattttaagagactattttgtcaaacaagattctgaagattttaaaagattttgcgagattatattgattttgttggattttag 44041001  T
Q  185 aagac--ttttaaaatgact-tttacaatcaggattttgaa 222  Q
    |||||  |||| |||||||| ||||||||||||||||||||    
T  44041002 aagactttttttaaatgactctttacaatcaggattttgaa 44041042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 14978628 - 14978463
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaa 185  Q
    ||||||||||| ||||||||||| |||  ||||| | |||| |||||||| |||||||||||||||| ||  |||| |||||| ||| | ||||||||||    
T  14978628 ggtgtattggaatgagattttaaaagaacattttagcaaatcaaattctgaagattttaaaagactttgtaagattatattgactttgttggattttaaa 14978529  T
Q  186 agac----ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataa 246  Q
    |  |    ||||||||  || ||||||||||||||||||||||||||||| | |||| ||||||||    
T  14978528 aatctttattttaaaaaaactttttacaatcaggattttgaacacatgattttaatgaatttataa 14978463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 36054005 - 36054119
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| |||||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  36054005 ttaggggggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 36054104  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  36054105 ttttaaaagactttt 36054119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 45214086 - 45214192
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaa 185  Q
    ||||||||||||||||||||| | ||||| |||||| ||| |||||  |  |||||||||||||||| |||||||| |||||||||| |  |||||||||    
T  45214086 ggtgtattggattgagattttgaaagattgttttggcaaaaaaaatcttaaagattttaaaagactttgtgtgattgtattgattttgtgagattttaaa 45214185  T
Q  186 agacttt 192  Q
    |||||||    
T  45214186 agacttt 45214192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 500
Target Start/End: Original strand, 12102609 - 12102736
Alignment:
Q  372 caatagactttatgaaattttaatatttgataggatcacatggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaa 471  Q
    ||||||||||||||||||||||| |||||| |||| |||||  | ||||||||||||||| ||||||| ||||||||||       ||| ||||||||||    
T  12102609 caatagactttatgaaattttaagatttgagaggaccacatatactcttaagaaaaattc-aaatgacaagagtgaatgaaaacaattataaacttaaaa 12102707  T
Q  472 tatggactttactaataataattataata 500  Q
    |||| | ||  |||||||||| |||||||    
T  12102708 tatgaaattggctaataataactataata 12102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 2124700 - 2124814
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  ||| |||||  || | |||||||||||||| ||  |||| |||||||||| | |||    
T  2124700 ttaggggggtgtattggattgagattttaaaagactgttttgataaaaaaaatcttgaaaattttaaaagactttgttggattgtattgattttgtggga 2124799  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  2124800 ttttaaaagactttt 2124814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 30589930 - 30589822
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  30589930 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 30589831  T
Q  185 aagactttt 193  Q
    |||||||||    
T  30589830 aagactttt 30589822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 26556958 - 26556844
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  |  |||||||||||||||| ||  |||| |||||||||| | |||    
T  26556958 ttaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttaaagattttaaaagactttgttcgattgtattgattttgtggga 26556859  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  26556858 ttttaaaagactttt 26556844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23360662 - 23360554
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||| ||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  23360662 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 23360563  T
Q  185 aagactttt 193  Q
    |||||||||    
T  23360562 aagactttt 23360554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23367502 - 23367394
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||| ||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  23367502 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 23367403  T
Q  185 aagactttt 193  Q
    |||||||||    
T  23367402 aagactttt 23367394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 24149838 - 24149946
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||| ||||||||| ||| |||||||  | | |||||  || |||||||||| ||||| ||  |||| |||||||||| | |||||||||    
T  24149838 gggtgtattggattaagattttaaaagactattttgatagaaaaaatcttgaagattttaaatgactttgttggattatattgattttgtgggattttaa 24149937  T
Q  185 aagactttt 193  Q
    |||||||||    
T  24149938 aagactttt 24149946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 46223308 - 46223415
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaa 185  Q
    ||||||||| ||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||||||||    
T  46223308 ggtgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaaa 46223407  T
Q  186 agactttt 193  Q
    ||||||||    
T  46223408 agactttt 46223415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 38628821 - 38628929
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || | |||||||||||||| ||   ||| |||||||||| | |||||||||    
T  38628821 gggtgtattggattgagattttaaaagactcttttgatagaaaaaatcttgaaaattttaaaagactttgttgaattgtattgattttgtgggattttaa 38628920  T
Q  185 aagactttt 193  Q
    |||||||||    
T  38628921 aagactttt 38628929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23698057 - 23697948
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaa-aataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||||||||||||||||| | ||| |||||  | |||  | || || |||||||||||||||| ||  |||| |||||||||| | |||||| |    
T  23698057 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattgattttgtgggatttca 23697958  T
Q  184 aaagactttt 193  Q
    ||||||||||    
T  23697957 aaagactttt 23697948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23716512 - 23716403
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaa-aataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||||||||||||||||| | ||| |||||  | |||  | || || |||||||||||||||| ||  |||| |||||||||| | |||||| |    
T  23716512 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattgattttgtgggatttca 23716413  T
Q  184 aaagactttt 193  Q
    ||||||||||    
T  23716412 aaagactttt 23716403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 23734968 - 23734859
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaa-aataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||||||||||||||||| | ||| |||||  | |||  | || || |||||||||||||||| ||  |||| |||||||||| | |||||| |    
T  23734968 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattgattttgtgggatttca 23734869  T
Q  184 aaagactttt 193  Q
    ||||||||||    
T  23734868 aaagactttt 23734859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35347091 - 35347167
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgatt 161  Q
    ||||||||| |||||||||||||  ||| |||||||| |||  |||| ||| |||||||||||||||| ||| ||||    
T  35347091 gggtgtatttgattgagattttatcagactattttggcaaactaaatcctgaagattttaaaagactttgtgagatt 35347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 50899499 - 50899555
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| | ||||||||||||||||||    
T  50899499 agattttaaaagactttgttggattgtattgattttgtcggattttaaaagactttt 50899555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 34290404 - 34290455
Alignment:
Q  462 aaacttaaaatatggactttactaataataattataatatttacaagttact 513  Q
    |||||||||||||| | || ||||||||||||||||||| | ||||||||||    
T  34290404 aaacttaaaatatgaaattgactaataataattataataataacaagttact 34290455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 46251201 - 46251307
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||| ||||||||||| |  |||| |||||| ||| |||||  |  |||||||||||||||| |||||||| |||||  ||| |  ||||||||    
T  46251201 gggtgtattgaattgagattttgaaggattgttttggcaaa-aaaatcttaaagattttaaaagactttgtgtgattgtattggctttttgagattttaa 46251299  T
Q  185 aagacttt 192  Q
    ||||||||    
T  46251300 aagacttt 46251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 35731939 - 35731873
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagactt 152  Q
    ||||||||||||||||||||||| ||||| |||||  | | |||||  || ||||||||||||||||    
T  35731939 ggtgtattggattgagattttaacagattgttttgatagaaaaaatcttgaagattttaaaagactt 35731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 24573649 - 24573702
Alignment:
Q  202 ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagattt 255  Q
    |||||||||||| ||||||||||| |||| | ||||||||||||| ||| ||||    
T  24573649 ttttacaatcagaattttgaacacgtgattttaatggatttataatacaaattt 24573702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 27594032 - 27593967
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattc-tgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| |||||||  ||| |||| || || |||||||||||||    
T  27594032 gggtgtattggattgagattttaaaagactattttgacaaaaaaaagtcttgaagattttaaaaga 27593967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 41632229 - 41632193
Alignment:
Q  84 agggtgtattggattgagattttaagagattattttg 120  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  41632229 agggtgtattgtattgagatttgaagagattattttg 41632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 52617140 - 52617196
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||| |||| |||||||| | |  |||||||||||||||||    
T  52617140 agattttaaaagactttgtgagattgtattgattctgtgagattttaaaagactttt 52617196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 88 - 268
Target Start/End: Original strand, 34027781 - 34027963
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||||| | |||||||||| ||| |||||  || |||||||||| || || ||| |||| |||||| ||| | ||||||||||||    
T  34027781 tgtattggattgagattttaaaatattattttggcaaacaaaatcttgaagattttaaaggattttgtgagattatattgactttgttggattttaaaag 34027880  T
Q  188 ac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaa 268  Q
    ||  |||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||| ||| |||| ||||||||||||    
T  34027881 actttttttaaatgactttttacaatcaggattttgaacacataattttaatggatttataatacaaattt-ttaagatttcaa 34027963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 38821254 - 38821360
Alignment:
Q  87 gtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    |||||||| ||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||| || ||| |||| |||||||||| | |||||||||||    
T  38821254 gtgtattgaattgagattttaaaagattattttggcaaacaaaattctgaagattttaaaagattttgtgagattatattgattttgttggattttaaaa 38821353  T
Q  187 gactttt 193  Q
    |||||||    
T  38821354 gactttt 38821360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 20156624 - 20156767
Alignment:
Q  127 aaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttta--aaatgactttt-acaatcaggattttgaac 223  Q
    |||||| || ||||||||||||| || ||| |||| |||||| ||| | ||||||||||||||||||   ||||||||||| |||||||| |||||||||    
T  20156624 aaaattttgaagattttaaaagattttgtgagattatattgactttgttggattttaaaagacttttttcaaatgactttttacaatcagaattttgaac 20156723  T
Q  224 acatgatgtcaatggatttataaaacagatttgttaagatttcaa 268  Q
    ||||||| | ||||||||||||| ||| |||| ||||||||||||    
T  20156724 acatgattttaatggatttataatacaaattt-ttaagatttcaa 20156767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 2289369 - 2289262
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||| |||||||| ||||| |||| ||||| | |||  |  |||||||||||||||| |||||||| ||||||||||   |||||||||    
T  2289369 gggtgtattggattgggattttaaaagattgttttagaaaaaagaatcttaaagattttaaaagactttgtgtgattgtattgattttgatggattttaa 2289270  T
Q  185 aagacttt 192  Q
    ||||||||    
T  2289269 aagacttt 2289262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 29941980 - 29941866
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  29941980 ttaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 29941881  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  29941880 ttttaaaagactttt 29941866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 7486952 - 7487066
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| |||   |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  7486952 ttaggggggtgtattggattgagattttaaaagaccgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 7487051  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  7487052 ttttaaaagactttt 7487066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 27979979 - 27979875
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||| | ||||| |||||  ||| | |||  |  |||||||||||||||| |||||||| |||| ||||||| ||| ||||||||    
T  27979979 tgtattggattgagattttgaaagattgttttgtcaaaaataatcttaaagattttaaaagactttgtgtgattgtattaattttatgggaatttaaaag 27979880  T
Q  188 acttt 192  Q
    |||||    
T  27979879 acttt 27979875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 28066509 - 28066405
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||| | ||||| |||||  ||| | |||  |  |||||||||||||||| |||||||| |||| ||||||| ||| ||||||||    
T  28066509 tgtattggattgagattttgaaagattgttttgtcaaaaataatcttaaagattttaaaagactttgtgtgattgtattaattttatgggaatttaaaag 28066410  T
Q  188 acttt 192  Q
    |||||    
T  28066409 acttt 28066405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 45548000 - 45547892
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| |  ||||||||    
T  45548000 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgagattttaa 45547901  T
Q  185 aagactttt 193  Q
    |||||||||    
T  45547900 aagactttt 45547892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 12135623 - 12135555
Alignment:
Q  81 aggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||||| | ||| |||||||| ||| |||||  || |||||||||||||    
T  12135623 aggagggtgtattggattgagattttgaaagactattttggcaaaaaaaatcatgaagattttaaaaga 12135555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 15283599 - 15283707
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagac-ttcgtgtgattctattgattttataggatttta 183  Q
    ||||||||||||||| |||||||| ||||| |||| ||||| | |||  |  ||||||||||| || || |||||||| ||||||||||   ||||||||    
T  15283599 gggtgtattggattgggattttaaaagattgttttagaaaaaagaatcttaaagattttaaaaaactttagtgtgattgtattgattttgatggatttta 15283698  T
Q  184 aaagacttt 192  Q
    |||||||||    
T  15283699 aaagacttt 15283707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 24935288 - 24935356
Alignment:
Q  81 aggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||| ||| |  || |||||||||||||    
T  24935288 aggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaaga 24935356  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 25683981 - 25684049
Alignment:
Q  81 aggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||| ||| |  || |||||||||||||    
T  25683981 aggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaaga 25684049  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 2086621 - 2086568
Alignment:
Q  202 ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagattt 255  Q
    ||||||||||| |||||| |||||||||| | ||||||||||||| ||||||||    
T  2086621 ttttacaatcaagattttaaacacatgattttaatggatttataatacagattt 2086568  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 24192664 - 24192728
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| |||||||  ||| ||| || || |||||||||||||    
T  24192664 gggtgtattggattgagattttaaaagactattttgataaaaaaagttttgaagattttaaaaga 24192728  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 45497544 - 45497490
Alignment:
Q  138 gattttaaaagacttcgtgtgattctattgattttataggattttaaaagacttt 192  Q
    |||||||||||| || |||||||| |||||||||| |  ||||||||||||||||    
T  45497544 gattttaaaagattttgtgtgattgtattgattttttgagattttaaaagacttt 45497490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 45505286 - 45505232
Alignment:
Q  138 gattttaaaagacttcgtgtgattctattgattttataggattttaaaagacttt 192  Q
    |||||||||||| || |||||||| |||||||||| |  ||||||||||||||||    
T  45505286 gattttaaaagattttgtgtgattgtattgattttttgagattttaaaagacttt 45505232  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 38821565 - 38821618
Alignment:
Q  202 ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagattt 255  Q
    ||||| ||||| ||||||||||||||||| | ||||||||||||| ||| ||||    
T  38821565 ttttaaaatcatgattttgaacacatgattttaatggatttataatacatattt 38821618  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 2086720 - 2086672
Alignment:
Q  95 gattgagattttaagagattattttggaaaataaaattctgcagatttt 143  Q
    |||||||||||||| ||| |||||| | ||||||||||||| |||||||    
T  2086720 gattgagattttaaaagactattttagtaaataaaattctgaagatttt 2086672  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 6288609 - 6288665
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| | ||||||||||| ||||||    
T  6288609 agattttaaaagactttgttggattgtattgattttgtgggattttaaaaaactttt 6288665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 25289248 - 25289140
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||  |||||||| ||| ||||||   ||| |||||  |  |||||||||||||||  ||| |||| |||||||| | |  ||||||||    
T  25289248 gggtgtattggattaggattttaaaagactattttaataaaaaaaatctttaagattttaaaagactgtgtgagattgtattgattctgtgagattttaa 25289149  T
Q  185 aagactttt 193  Q
    |||||||||    
T  25289148 aagactttt 25289140  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 33136635 - 33136579
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||  ||| |||| |||||||| |||  |||||||||||||||||    
T  33136635 agattttaaaagactgtgtgagattgtattgattctatgagattttaaaagactttt 33136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 43023600 - 43023504
Alignment:
Q  96 attgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagacttt 192  Q
    ||||||||||||| ||| | |||| ||||| | |||  |  ||||||||||| ||||  ||||||| ||||||||||   |||||||||||||||||    
T  43023600 attgagattttaaaagactgttttagaaaaaagaatcttaaagattttaaaaaactttatgtgattgtattgattttgatggattttaaaagacttt 43023504  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 46197106 - 46197291
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||||| |||||  |||||||||  || ||||||||||||||||  ||  ||| |||||||||||||| ||||| |    
T  46197106 gggtgtattggattgagattttaaaagattgttttgacaaataaaatattggagattttaaaagactttatgaaattatattgattttatagaatttt-a 46197204  T
Q  185 aagac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagatttgttaagatttcaat 269  Q
    |||||  |||| ||||||| |||||||||||| ||||| |||||||||| | ||||||||||||| ||| |||||  |||||||||||    
T  46197205 aagacttttttcaaatgactttttacaatcagaatttt-aacacatgattttaatggatttataacacaaatttgcaaagatttcaat 46197291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 341 - 492
Target Start/End: Complemental strand, 41061168 - 41061013
Alignment:
Q  341 tttaatggatttataagacaggttt-taaaca---caatagactttatgaaattttaatatttgataggatcacatggattcttaagaaaaattcaaaat 436  Q
    |||||||||||||||| |||| ||| |||| |   ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  41061168 tttaatggatttataacacagatttataaagatttcaatagactttatgaaattttaagatttgagaggatcacatgaattcttaagaaaaattcaaaat 41061069  T
Q  437 gacgagagtgaatgnnnnnnnttacaaacttaaaatatggactttactaataataa 492  Q
    ||| |||| |||||       |||  ||||||||||||| | || |||||||||||    
T  41061068 gacaagagggaatgaaaaaaattatgaacttaaaatatgaaattgactaataataa 41061013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 372 - 511
Target Start/End: Complemental strand, 11042406 - 11042266
Alignment:
Q  372 caatagactttatgaaattttaatatttgataggatcacatggattcttaagaaaaattcaaaatgacgagagtgaatgnnnnnnnttacaaacttaaaa 471  Q
    ||||||| ||||||||||||||| |||||| |||||| | |||||||||||||||||||||||||||| ||||||||||       |||  |||||||||    
T  11042406 caatagattttatgaaattttaagatttgagaggatcgcgtggattcttaagaaaaattcaaaatgacaagagtgaatgaaaaaaattaagaacttaaaa 11042307  T
Q  472 tatggactttact-aataataattataatatttacaagtta 511  Q
    |||||| || ||| || ||||||||||||| | ||||||||    
T  11042306 tatggaattgactaaaaaataattataataataacaagtta 11042266  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 11042519 - 11042398
Alignment:
Q  155 tgtgattctattgattttataggattttaaaagactttta-aaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataaaacaga 252  Q
    ||||||| |||||||||||||| ||||||||||||||||  ||||||||||| ||| ||| ||||||||||||||||| | |||| |||||||| ||| |    
T  11042519 tgtgattgtattgattttatagaattttaaaagacttttttaaatgactttttacagtcaagattttgaacacatgattttaatgaatttataacacata 11042420  T
Q  253 tttgttaagatttcaatggatt 274  Q
    ||||  ||||||||||| ||||    
T  11042419 tttgaaaagatttcaatagatt 11042398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 152952 - 152838
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| |||||    
T  152952 ttaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtagga 152853  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  152852 ttttaaaagactttt 152838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 40098297 - 40098154
Alignment:
Q  127 aaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttta--aaatgactttt-acaatcaggattttgaac 223  Q
    |||||| || ||||||||||||| || ||  |||| |||||| ||| | | ||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  40098297 aaaattttgaagattttaaaagattttgtaagattatattgactttcttgaattttaaaagacttttttcaaatgactttttacaatcaggattttgaac 40098198  T
Q  224 acatgatgtcaatggatttataaaacagatttgttaagatttcaa 268  Q
    ||||||| | ||||||||||||| ||| | || ||||||||||||    
T  40098197 acatgattttaatggatttataatacaaaatt-ttaagatttcaa 40098154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 12252387 - 12252495
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||||| |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  12252387 gggtgtattggattgagattttaaaagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 12252486  T
Q  185 aagactttt 193  Q
    |||||||||    
T  12252487 aagactttt 12252495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 87 - 246
Target Start/End: Original strand, 42677250 - 42677412
Alignment:
Q  87 gtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    ||||||||||||||||||||   ||||| |||||| ||| |||||  |  ||||||||||||| || |||||||| |||||||||| | | |||||||||    
T  42677250 gtgtattggattgagattttgcaagattgttttggcaaaaaaaatcttaaagattttaaaagattttgtgtgattgtattgattttgtggaattttaaaa 42677349  T
Q  187 gactt--ttaaaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataa 246  Q
    |||||  || ||| ||||||| ||||| |||||||| ||  || ||| |||||||||||||||    
T  42677350 gactttatttaaaagacttttcacaattaggattttcaaaccaggatttcaatggatttataa 42677412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 27417651 - 27417757
Alignment:
Q  87 gtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaa 186  Q
    |||||||||||||||||||||| ||| |||||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||||    
T  27417651 gtgtattggattgagattttaaaagagtattttgatagaaaaaatcttgaagattttaaaagactttgttagattgtattgattttgtgggattttaaaa 27417750  T
Q  187 gactttt 193  Q
    |||||||    
T  27417751 gactttt 27417757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 30111878 - 30111770
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| |||||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  30111878 gggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 30111779  T
Q  185 aagactttt 193  Q
    || ||||||    
T  30111778 aaaactttt 30111770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 34114542 - 34114649
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||| |||||| | ||| | |||||| | | |||||  |  |||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  34114542 gggtgtattggattgggattttgaaagactgttttggcagaaaaaatcttaaagattttaaaagactttgtgtgattgtattgattttgaaggattttaa 34114641  T
Q  185 aagacttt 192  Q
    ||||||||    
T  34114642 aagacttt 34114649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 43056689 - 43056797
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||| ||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  43056689 gggtgtattgaattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 43056788  T
Q  185 aagactttt 193  Q
    |||||||||    
T  43056789 aagactttt 43056797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 47912525 - 47912633
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||| ||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  47912525 gggtatattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 47912624  T
Q  185 aagactttt 193  Q
    |||||||||    
T  47912625 aagactttt 47912633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 25295354 - 25295407
Alignment:
Q  202 ttttacaatcaggattttgaacacatgatgtcaatggatttataaaacagattt 255  Q
    |||||||||||||||||||||||  |||| ||||||||||||||| | ||||||    
T  25295354 ttttacaatcaggattttgaacatttgatttcaatggatttataatatagattt 25295407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 33475622 - 33475514
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||| |||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| |   |||||||    
T  33475622 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgaaattttaa 33475523  T
Q  185 aagactttt 193  Q
    |||||||||    
T  33475522 aagactttt 33475514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 11042568 - 11042522
Alignment:
Q  86 ggtgtattggattgagattttaagagattattttggaaaataaaatt 132  Q
    |||||||| |||||||||||||| |||||||||||| ||| ||||||    
T  11042568 ggtgtatttgattgagattttaaaagattattttggcaaacaaaatt 11042522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 32631616 - 32631550
Alignment:
Q  81 aggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaa 147  Q
    |||||||||||||||||||||||||| | ||| |||||||| ||| ||| |  || |||||||||||    
T  32631616 aggagggtgtattggattgagattttgaaagactattttggcaaaaaaagtcatgaagattttaaaa 32631550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 12893165 - 12893218
Alignment:
Q  139 attttaaaagacttcgtgtgattctattgattttataggattttaaaagacttt 192  Q
    |||||||||||||| ||| |||| |||||||| |||  ||||||||||||||||    
T  12893165 attttaaaagactttgtgagattgtattgattctatgagattttaaaagacttt 12893218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 39300427 - 39300492
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattc-tgcagattttaaaaga 149  Q
    |||||||||||||||||||||||| ||| |||||||  ||| |||| || || |||||||||||||    
T  39300427 gggtgtattggattgagattttaaaagactattttgacaaaaaaaagtcttgaagattttaaaaga 39300492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 7994197 - 7994141
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||  ||| |||| |||||||| | || |||||||||||||||||    
T  7994197 agattttaaaagactgtgtgagattgtattgattctgtaagattttaaaagactttt 7994141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 9881453 - 9881509
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||  ||| |||| |||||||| |||  |||||||||||||||||    
T  9881453 agattttaaaagactgtgtgagattgtattgattctatgagattttaaaagactttt 9881509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 35089150 - 35089206
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaagactttt 193  Q
    |||||||||||||||| ||  |||| |||||||||| |  |||||||||||||||||    
T  35089150 agattttaaaagactttgttggattgtattgattttgtgagattttaaaagactttt 35089206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 10262801 - 10262967
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    |||||||||||||||| ||||||||||||  ||| |||||| | |||| ||||     |||||||||||||||| ||| |||| |||||||| | | |||    
T  10262801 ttaggagggtgtattgaattgagattttataagactattttagcaaatcaaata----agattttaaaagactttgtgagattatattgattatgttgga 10262896  T
Q  179 ttttaaaagac--ttttaaaatgac-ttttacaatcaggattttgaacacatgatgtcaatggatttataa 246  Q
    |||||||| ||  ||||||||| || ||||||||||| ||||||||||||||||| ||||| || ||||||    
T  10262897 ttttaaaatacttttttaaaataactttttacaatcaagattttgaacacatgatttcaatagaattataa 10262967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 10008376 - 10008538
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| |||||||| ||| ||| | | | | |||||||||||          || |||||||||| | |||||||||    
T  10008376 gggtgtattggattgagattttaaaagactattttggcaaacaaagtccagaatattttaaaaga----------ttatattgattttgttggattttaa 10008465  T
Q  185 aagact-tttaaaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataaaacagattt 255  Q
    |||||| |||  |||||||||| | ||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  10008466 aagactatttgtaatgactttttataatcaggattttgaacacatgattttaatggatttataatacagattt 10008538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 29864748 - 29864861
Alignment:
Q  80 taggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggat 179  Q
    |||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||    
T  29864748 taggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggat 29864847  T
Q  180 tttaaaagactttt 193  Q
    ||||||||||||||    
T  29864848 tttaaaagactttt 29864861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 3109351 - 3109459
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  3109351 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 3109450  T
Q  185 aagactttt 193  Q
    |||||||||    
T  3109451 aagactttt 3109459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 6475744 - 6475852
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||| ||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  6475744 gggtgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 6475843  T
Q  185 aagactttt 193  Q
    |||||||||    
T  6475844 aagactttt 6475852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 35165729 - 35165661
Alignment:
Q  81 aggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||| ||| |  || |||||||||||||    
T  35165729 aggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcatgaagattttaaaaga 35165661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 5958088 - 5958037
Alignment:
Q  137 agattttaaaagacttcgtgtgattctattgattttataggattttaaaaga 188  Q
    |||||||||||||||| |||||||| ||||||||||   |||||||||||||    
T  5958088 agattttaaaagactttgtgtgattatattgattttgatggattttaaaaga 5958037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 933 - 1103
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| ||||||||||||||||||||||   ||||| |||||| ||| |||||  |  ||||||||||||| || |||||||| |||||||||| | |||    
T  933 ttaggggggtgtattggattgagattttgcaagattgttttggcaaaaaaaatcttaaagattttaaaagattttgtgtgattgtattgattttgtggga 1032  T
Q  179 ttttaaaagactt--ttaaaatgactttt-acaatcaggattttgaacacatgatgtcaatggatttataa 246  Q
    |||||||||||||  || |||  |||||| ||||| |||||||| ||  || ||| |||||||||||||||    
T  1033 ttttaaaagactttatttaaaaaacttttcacaattaggatttttaaaccaggatttcaatggatttataa 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 80788 - 80902
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  80788 ttaggggggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 80887  T
Q  179 ttttaaaagactttt 193  Q
    |||||||||||||||    
T  80888 ttttaaaagactttt 80902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 20443 - 20556
Alignment:
Q  80 taggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggat 179  Q
    |||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||    
T  20443 taggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggat 20542  T
Q  180 tttaaaagactttt 193  Q
    ||||||||||||||    
T  20543 tttaaaagactttt 20556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 33826 - 33934
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  33826 gggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 33925  T
Q  185 aagactttt 193  Q
    |||||||||    
T  33926 aagactttt 33934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 2275271 - 2275377
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||| |||||||| ||||||||| |||||| | |||  |  |||||||||||||||| |||||||| ||||||||||   ||||| |||    
T  2275271 gggtgtattggattgggattttaaaagattattt-ggaaaaaagaatcttaaagattttaaaagactttgtgtgattgtattgattttgatggattctaa 2275369  T
Q  185 aagacttt 192  Q
    ||||||||    
T  2275370 aagacttt 2275377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 11632681 - 11632795
Alignment:
Q  79 ttaggagggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttatagga 178  Q
    ||||| |||||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||    
T  11632681 ttaggggggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtggga 11632780  T
Q  179 ttttaaaagactttt 193  Q
    |||||||| ||||||    
T  11632781 ttttaaaatactttt 11632795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 10553818 - 10553713
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||||||||||    
T  10553818 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaaaag 10553719  T
Q  188 actttt 193  Q
    ||||||    
T  10553718 actttt 10553713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 40411503 - 40411394
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattct-gcagattttaaaagacttcgtgtgattctattgattttataggatttta 183  Q
    |||||||||||||||||||||||| ||| | |||||  | | |||| ||| | |||||||||||||||| ||  |||| |||||||||| | ||||||||    
T  40411503 gggtgtattggattgagattttaaaagactgttttgatagaaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggatttta 40411404  T
Q  184 aaagactttt 193  Q
    ||||||||||    
T  40411403 aaagactttt 40411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 13949805 - 13949910
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||||||||||||||||| ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | ||||| ||||||    
T  13949805 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattataaaag 13949904  T
Q  188 actttt 193  Q
    ||||||    
T  13949905 actttt 13949910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 10553440 - 10553541
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaa 184  Q
    ||||||||||||||||||||| || ||| | |||||  | | |||||  || |||||||||||||||| ||  |||| |||||||||| | |||||||||    
T  10553440 gggtgtattggattgagatttaaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattgattttgtgggattttaa 10553539  T
Q  185 aa 186  Q
    ||    
T  10553540 aa 10553541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 6827953 - 6827988
Alignment:
Q  85 gggtgtattggattgagattttaagagattattttg 120  Q
    |||||||||||||||||||||||| |||||||||||    
T  6827953 gggtgtattggattgagattttaaaagattattttg 6827988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 6901360 - 6901421
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaaga 149  Q
    |||| |||||||||||||||| ||| |||||||| ||| ||| || || |||||||||||||    
T  6901360 tgtaatggattgagattttaaaagactattttggcaaaaaaagttttgaagattttaaaaga 6901421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 15629 - 15733
Alignment:
Q  88 tgtattggattgagattttaagagattattttggaaaataaaattctgcagattttaaaagacttcgtgtgattctattgattttataggattttaaaag 187  Q
    ||||||| ||| ||||||| |  |||| |||||| |||||||||  |  |||||||||||||| || ||||||| |||||||||| |  |||||||||||    
T  15629 tgtattgaattaagattttgaaggattgttttggcaaataaaatcttaaagattttaaaagacctcatgtgattgtattgattttttgagattttaaaag 15728  T
Q  188 acttt 192  Q
    |||||    
T  15729 acttt 15733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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