View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_23 (Length: 282)
Name: NF6009_low_23
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 38122415 - 38122658
Alignment:
| Q |
23 |
cacagatgattcaaattgaaacaaaa-tcattcattatgtcatcaagcccataaaactttaaaataatttgaaattgctttaccctatcaataaatcttc |
121 |
Q |
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| T |
38122415 |
cacagatgattcaaattgaaacaaaaatcattcattatgtcatcaagcccataaaactttaaaataatttgaaattgctttaccctatcaataaatcttg |
38122514 |
T |
|
| Q |
122 |
agactaacgtacaaaattacatagttttaacatacattcaataatcaaagtttcaaaaggaccacatgcatattctacaagacaatggtttaagagcatg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122515 |
agactaacgtacaaaattacatagttttaacatacattcaataatcaaagtttcaaaaggaccacatgcatattctacaagacaatggtttaagagcatg |
38122614 |
T |
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| Q |
222 |
aagtcnnnnnnngagtcaattgagtcaacatagtaagataatgt |
265 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
38122615 |
aagtcaaaaaaagagtcaattgagtcaacatagtaagataatgt |
38122658 |
T |
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