View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_26 (Length: 264)
Name: NF6009_low_26
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 29678266 - 29678513
Alignment:
| Q |
17 |
agaagaaagcagaacttatcttcatttcctcgccagatattggccacttagtttcatcacttgaatttgcaaaactcttaatcaacactcacaacaatat |
116 |
Q |
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| T |
29678266 |
agaagaaagcagaacttatcttcattccctcaccagatattggccacttagtttcatcacttgaatttgcaaaactcttaatcaacactcacaacaatat |
29678365 |
T |
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| Q |
117 |
tttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaactcacaacctcaaatcaaactcattgat |
216 |
Q |
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| T |
29678366 |
tttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaacttacaacctcaaatcaaactcattgat |
29678465 |
T |
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| Q |
217 |
cttcctcaagttgaatcaccaccaaaagaactattgatatcaccacca |
264 |
Q |
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| T |
29678466 |
cttcctcaagttgaatcaccaccaaaagaactattgatatcaccacca |
29678513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 29700735 - 29700954
Alignment:
| Q |
26 |
cagaacttatcttcatttcctcgccagatattggccacttagtttcatcacttgaatttgcaaaactcttaatcaacactcacaacaatattttcatcac |
125 |
Q |
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| T |
29700735 |
cagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccatgacaaaaatctttacatcac |
29700834 |
T |
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| Q |
126 |
agtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaactcacaacctcaaatcaaactcattgatcttcctcaa |
225 |
Q |
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| T |
29700835 |
agtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattcaactgattgatcttcctgaa |
29700934 |
T |
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| Q |
226 |
gttgaatcaccaccaaaaga |
245 |
Q |
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| T |
29700935 |
gtagaaccacctccacaaga |
29700954 |
T |
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