View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_3 (Length: 663)
Name: NF6009_low_3
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Original strand, 10120382 - 10121024
Alignment:
| Q |
1 |
caagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120382 |
caagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccct |
10120481 |
T |
|
| Q |
101 |
ttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10120482 |
ttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttacagctacaaacatggtttcaaag |
10120581 |
T |
|
| Q |
201 |
gctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgcttaaaggatcctataatt |
300 |
Q |
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| T |
10120582 |
gctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgcttaaagtatcctataatt |
10120681 |
T |
|
| Q |
301 |
tttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattctnnnnnnnngttgtatactactcattc |
400 |
Q |
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| T |
10120682 |
tttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattctaaaagaaagttgtatactactcattc |
10120781 |
T |
|
| Q |
401 |
atgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatatcattgttggtttcattgatacaggt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
10120782 |
atgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatgttattgttggtttcattgatacaggt |
10120881 |
T |
|
| Q |
501 |
aggaattcttattcttagagtatggtgatgcctttttgataacttctatgtaactataccttcattctcacgtacaacatgcaccttttcttagaagtct |
600 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120882 |
-----gtcgtattcttagagtatggtgatgcctttttgataacttctatgtaactataccttcattctcacgtacaacatgcaccttttcttagaagtct |
10120976 |
T |
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| Q |
601 |
cgtgaaaacatttattagtcggttttcacatggacttacacacttttt |
648 |
Q |
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| T |
10120977 |
cgtgaaaacatttattagtcggttttcacatggatttacacacttttt |
10121024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 388 - 496
Target Start/End: Complemental strand, 30629948 - 30629840
Alignment:
| Q |
388 |
atactactcattcatgggactttatgggacttttggatgatgaaaccatggagaatatgggatactcaaacaaaaaccaagcaaatatcattgttggttt |
487 |
Q |
| |
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|||| |||||||||||||| || ||||||||||| |||||| |||||||||| | | | || |||||| ||||| |||| ||||||||| ||||||| |
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| T |
30629948 |
atacaactcattcatgggatttcatgggacttttagatgatcaaaccatggaaactcttggctactcagttaaaaatcaagaaaatatcatcattggttt |
30629849 |
T |
|
| Q |
488 |
cattgatac |
496 |
Q |
| |
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||||||||| |
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| T |
30629848 |
cattgatac |
30629840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 30630415 - 30630322
Alignment:
| Q |
150 |
ttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttc |
243 |
Q |
| |
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||||| ||||||| ||||| ||||||| ||||| | |||||| |||| |||||||||||| ||| | || |||||||||||| | ||||||| |
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| T |
30630415 |
ttgaagaagcacaagcttctcatatttatagctatagacatggattcagaggctttgcagctaagctcactgatgaacaagcttccaaaatttc |
30630322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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