View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_35 (Length: 237)
Name: NF6009_low_35
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3960773 - 3960546
Alignment:
| Q |
1 |
tcatttttctcttcattaagagaaagatggggaaga---------agtttgattgagagaatctcttttgttggatttagcgaatagggctaatctgaac |
91 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3960773 |
tcatttttctcttcattaagagaaagatggggaagatcaaaagagagtttgattgagaggatctcttttgttggatttagcgaatagggctaatctgaac |
3960674 |
T |
|
| Q |
92 |
taagtggccaaccacagtttgaatctcgggagaggcgaaccatagttcaaatctctgctcaacgaggcaccttattcgacaactccttaaacaatattga |
191 |
Q |
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|||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3960673 |
taagtggccaacagcagtttgaatcttgggagaagcgaaccatagttcaaatctctgctcaacgaggcaccttattcgacaactccttaaacaatattga |
3960574 |
T |
|
| Q |
192 |
ctcctattccatcttaataagtactcaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3960573 |
ctcctattccatcttaataagtactcaa |
3960546 |
T |
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