View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_5 (Length: 526)
Name: NF6009_low_5
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_5 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 13212515 - 13212184
Alignment:
| Q |
19 |
ttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggctacctttagaagatgaagaaacaccagtgaatgtgc |
118 |
Q |
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| T |
13212515 |
ttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggctacctttagaagatgaagaaacaccagtgaatgtgc |
13212416 |
T |
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| Q |
119 |
caggaaatggagggttagggtcaccgggaaccatgggaagtcaacaacaacagcagcagaaccagcaacagcaacaacttgtagcagatcctaatgcttc |
218 |
Q |
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| T |
13212415 |
caggaaatggagggttagggtcaccgggaaccatgggaagtcaacaacaacagcagcagaaccagcaacagcaacaacttgtagcagatcctaatgcttc |
13212316 |
T |
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| Q |
219 |
atcacttttccatggagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctcctttttaaccaaaa |
318 |
Q |
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| T |
13212315 |
atcacttttccatggagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctcctttttaaccaaaa |
13212216 |
T |
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| Q |
319 |
atgttattcacttaatcacttttctcatcatg |
350 |
Q |
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| T |
13212215 |
atgttattcacttaatcacttttctcatcatg |
13212184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 430 - 517
Target Start/End: Complemental strand, 13212103 - 13212016
Alignment:
| Q |
430 |
atctatcacttgttcattctccttataacttagtttaaattgaagacttttctttgatcatggtattaagttgactacttgatgatgt |
517 |
Q |
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| T |
13212103 |
atctatcacttgttcattctccttataacttagtttaaattgaagacttttctttgatcatggtattaagttgactacttgatgatgt |
13212016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 13478 - 13555
Alignment:
| Q |
233 |
gagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctccttttt |
310 |
Q |
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| T |
13478 |
gagttcttcaaaattttcacaattcataccaattactacatgaaggttattggtgtggaagtgctcgtcctccatttt |
13555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 29846011 - 29845934
Alignment:
| Q |
233 |
gagttcctcaaaatcttctcaattcatgccaattaccagctgaaggttattggggtggaagtgctcgtcctccttttt |
310 |
Q |
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| T |
29846011 |
gagttcttcaaaattttcacaattcataccaattactacatgaaggttattggtgtggaagtgctcgtcctccatttt |
29845934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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