View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6009_low_8 (Length: 494)

Name: NF6009_low_8
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6009_low_8
NF6009_low_8
[»] chr1 (9 HSPs)
chr1 (18-494)||(9070362-9070842)
chr1 (363-494)||(9087008-9087139)
chr1 (421-494)||(8862628-8862701)
chr1 (409-494)||(9126200-9126285)
chr1 (241-321)||(8862454-8862534)
chr1 (421-489)||(8866497-8866565)
chr1 (421-490)||(8980043-8980112)
chr1 (241-313)||(8866329-8866401)
chr1 (366-406)||(9108905-9108945)


Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 9070362 - 9070842
Alignment:
Q  18 aaatacaatggttcccattcccaatataattgaacctgcatta----acacattaacagttacattttcctcccagtataaacaaataaaataataaaga 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070362 aaatacaatggtgcccattcccaatataattgaacctgcattaattaacacattaacagttacattttcctcccagtataaacaaataaaataataaaga 9070461  T
Q  114 agacgcaaatagtactttgaaatataataaagactcacctatagctgaaaaaataagagcttttggaggctgaaattttttatgtttatggttgcaataa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9070462 agacgcaaatagtactttgaaatataataaagactcacctatagccgaaaaaataagagcttttggaggctgaaattttttatgtttttggttgcaataa 9070561  T
Q  214 aaacattcaatgccaggtttggtggtattgttcatccatttgcatttcatgccttttgactcgcactttgcacaactttgtttgggccaactcaaactga 313  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9070562 aaacattcaatgccaggtttggtggtgttgttcatccatttgcatttcatgccttttgactcgcactttgcacaactttgtttgggccaactcaatctga 9070661  T
Q  314 gaaaattagacctcaggtctgatcctatcatagacgcgttgacgtcggacatcttggtacaagatacaaggtccaaatcaacgatatcttcgtccgaatc 413  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  9070662 gaaaattatacctcaggtctgatcccatcatagacgcgttgacgtcgaacatcttagtacaagatagaaggtccaaatcaacgatatcttcgtccgaatc 9070761  T
Q  414 agcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaac 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9070762 agcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgttgtttcctaac 9070842  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 494
Target Start/End: Original strand, 9087008 - 9087139
Alignment:
Q  363 catcttggtacaagatacaaggtccaaatcaacgatatcttcgtccgaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtc 462  Q
    |||||||||||| ||| |||||||||| |  |||| |  ||| || |||| || | | ||||||||||||||||||||||||||||| |||| |  | ||    
T  9087008 catcttggtacatgatgcaaggtccaacttgacgacactttcatcagaataagaagcgtaaattggacaagtgatcatatcttgtgaatctttgtttatc 9087107  T
Q  463 tgatattggtttctcaagtgtcgtttcctaac 494  Q
    ||||||||||||||||| ||||||||| ||||    
T  9087108 tgatattggtttctcaaatgtcgtttcttaac 9087139  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 494
Target Start/End: Original strand, 8862628 - 8862701
Alignment:
Q  421 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaac 494  Q
    |||| |||||| |||||||||||||| |||||||||||||| ||||  ||||||||||||||| ||||||||||    
T  8862628 taaactggacaggtgatcatatcttgcgactcttgggatgtttgatcatggtttctcaagtgttgtttcctaac 8862701  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 494
Target Start/End: Original strand, 9126200 - 9126285
Alignment:
Q  409 gaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaac 494  Q
    ||||||||| | ||||||||||| |||||||||||||||||| ||||| ||   ||||  | |||||||| |||||||||||||||    
T  9126200 gaatcagcagcgtaaattggacatgtgatcatatcttgtgacccttggaataattgatcgtagtttctcaggtgtcgtttcctaac 9126285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 8862454 - 8862534
Alignment:
Q  241 ttgttcatccatttgcatttcatgccttttgactcgcactttgcacaactttgtttgggccaactcaaactgagaaaatta 321  Q
    |||||| ||||||||||||||||||| ||||  |||||| ||| |||| | ||||| |||||||| |||  ||||||||||    
T  8862454 ttgttcttccatttgcatttcatgccatttgcttcgcaccttgtacaattatgtttcggccaacttaaagagagaaaatta 8862534  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 8866497 - 8866565
Alignment:
Q  421 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttc 489  Q
    ||||||||||| ||||||||||||||||||  ||| ||||  |||| || |||||||| ||||||||||    
T  8866497 taaattggacaggtgatcatatcttgtgaccgttgagatgattgatcttcgtttctcaggtgtcgtttc 8866565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 8980043 - 8980112
Alignment:
Q  421 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcc 490  Q
    ||||||||||| || ||||||| |||| ||| |||| ||| ||||| ||||||||||| |||| ||||||    
T  8980043 taaattggacaggtaatcatattttgtaacttttggaatgactgatcttggtttctcaggtgttgtttcc 8980112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 8866329 - 8866401
Alignment:
Q  241 ttgttcatccatttgcatttcatgccttttgactcgcactttgcacaactttgtttgggccaactcaaactga 313  Q
    |||||| |||||||||||||||||| ||| |  | ||| |||| |||| ||||||  ||||||||||||||||    
T  8866329 ttgttcttccatttgcatttcatgcttttagctttgcattttgtacaattttgttcaggccaactcaaactga 8866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 9108905 - 9108945
Alignment:
Q  366 cttggtacaagatacaaggtccaaatcaacgatatcttcgt 406  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  9108905 cttggtacacaatacaaggttcaaatcaacgatatcttcgt 9108945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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