View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6010_low_2 (Length: 359)
Name: NF6010_low_2
Description: NF6010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6010_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 93 - 347
Target Start/End: Original strand, 45065434 - 45065687
Alignment:
| Q |
93 |
cttgtttgagagtcccttctactagattgaatcattgatcccactttaatttatcccttcaaacattggaattgttttgggaatctaaatagaaagtctg |
192 |
Q |
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| T |
45065434 |
cttgtttgagagtccgttctactagattgaatcattgatcccattttaatttatcccttcaaacattggaattgttttgggaatctaaatataaagtctt |
45065533 |
T |
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| Q |
193 |
tactttaatattttccacgttccaatttcaac-taaaaataccaccttcaaaacccctttttgaggttgttaaagcaacacactggggggactcatccgt |
291 |
Q |
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| T |
45065534 |
tactttaatattttccacgttccaatttcaacttaaaaataccaccttcaaaacccctttttgaggttgttaaagcaacaca--acggggactcatccgt |
45065631 |
T |
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| Q |
292 |
cacggtaagtttcagtttcttctcaagaataggaacacgttcgttctttcctatgc |
347 |
Q |
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| T |
45065632 |
cacggtaagtttcagtttcttctcaagaataggaacacgttcgttctttcctatgc |
45065687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 45064598 - 45064684
Alignment:
| Q |
15 |
ttgttcgagacacaattcggaaaagtacatttctctcaatcaaaattggaacatagatttttcatatcatggaagactcttgtttga |
101 |
Q |
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| T |
45064598 |
ttgttcgagacacaattcggaaaagtacatttctctcaatcaaaattggaacatagatttttcatatcatggaagacacttgtttga |
45064684 |
T |
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