View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6010_low_3 (Length: 322)

Name: NF6010_low_3
Description: NF6010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6010_low_3
NF6010_low_3
[»] chr4 (22 HSPs)
chr4 (144-305)||(6738206-6738367)
chr4 (16-305)||(6748560-6748858)
chr4 (224-305)||(6811531-6811612)
chr4 (201-305)||(6503827-6503931)
chr4 (222-305)||(6792076-6792159)
chr4 (224-305)||(6593461-6593542)
chr4 (222-305)||(6541756-6541839)
chr4 (222-305)||(6522906-6522989)
chr4 (226-305)||(6832052-6832131)
chr4 (224-305)||(6502599-6502680)
chr4 (224-305)||(6627110-6627191)
chr4 (201-305)||(6646755-6646859)
chr4 (9-143)||(6811702-6811836)
chr4 (224-305)||(6550723-6550804)
chr4 (224-305)||(6769237-6769318)
chr4 (9-78)||(6626886-6626955)
chr4 (17-81)||(6502383-6502447)
chr4 (15-79)||(6503632-6503696)
chr4 (15-87)||(6792312-6792384)
chr4 (15-78)||(6647009-6647072)
chr4 (15-81)||(6665419-6665485)
chr4 (15-63)||(6832300-6832348)
[»] scaffold0729 (2 HSPs)
scaffold0729 (222-305)||(6470-6553)
scaffold0729 (15-87)||(6245-6317)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 6738367 - 6738206
Alignment:
Q  144 agagtatgaaatgctcccttaacatattctaggtagcatttgtcctcaaaaaagttcccaatctgagtataaatttcgttggcaatggttgatttaccaa 243  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  6738367 agagtacgaaatgctcccttgacatattataggcagcatttgtcctcaaaaaagttcccaatccgagtataaatggcgttggcaatggttgatttaccaa 6738268  T
Q  244 tccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  6738267 tccctgtcatcccccatatccctagcaggagagaagattttgattgtttcaatagttgaatc 6738206  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 6748858 - 6748560
Alignment:
Q  16 caagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactgcagatatatctattttacttgctttgtcgatatc 115  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||| ||| ||| ||||  | || ||||| |||||||||| ||||| ||||||  ||    
T  6748858 caagtataaaaagtacctttttatgttgaagtctttcttttaaaatctcttctccagattgcattgtagatacatctattttagttgctgtgtcgagttc 6748759  T
Q  116 taaaagaatattctcttgtaaagaaactagagtatgaa----------atgctcccttaacatattctaggtagcatttgtcctcaaaaaagttcccaat 205  Q
     |||||||  |||||||||||||||||||||||| |||          ||| |||||  |||||||||||  ||||| | ||||||||| ||   |||||    
T  6748758 aaaaagaagtttctcttgtaaagaaactagagta-gaattttcatctgatgttccctggacatattctagaaagcatgtatcctcaaaatagggaccaat 6748660  T
Q  206 ctgagtataaatttcgttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
     |||  ||||||  | || ||||| | ||||||||||| ||||| ||||||||||||||| |||||||||||  |||| |||||||| ||||||||||||    
T  6748659 ttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggggatttcgattgttttaatagttgaatc 6748560  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 6811612 - 6811531
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6811612 ggcaatggctgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaattgttgaatc 6811531  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 6503827 - 6503931
Alignment:
Q  201 ccaatctgagtataaatttcgttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagtt 300  Q
    ||||||||| |||||||  | | |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  6503827 ccaatctgattataaatggcttcggcaatggttgatttaccaatccctgtcatcccccatatccccagcaggagaggagattttgattgtttcaatagtt 6503926  T
Q  301 gaatc 305  Q
    |||||    
T  6503927 gaatc 6503931  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 6792159 - 6792076
Alignment:
Q  222 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  6792159 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgatcgtttcaatagttgaatc 6792076  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 6593461 - 6593542
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  6593461 ggcaatggttgatttaccaatccctgtcatcccccatatccctattatgagaggactttttgattgtttcaatagttgaatc 6593542  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 6541756 - 6541839
Alignment:
Q  222 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  6541756 ttggcgatggttgatttgccaatccctgtcatcccccatatccctactaaaagaggacattttgattgtttcaatagttgaatc 6541839  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 6522906 - 6522989
Alignment:
Q  222 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||||||||||||||||||||||  |||||||||||| |||| || ||||||| ||||||||||||||||||||||||||    
T  6522906 ttggcaatggttgatttaccaatccctaccatcccccatatgcctattacgagaggagattttgattgtttcaatagttgaatc 6522989  T

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Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 6832131 - 6832052
Alignment:
Q  226 caatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  6832131 caatgcttgatttaccaatccctggcatcccccatatccctagtatgagaggagattttgactgtttcaatagttgaatc 6832052  T

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Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 6502599 - 6502680
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||| || |||||||||||||||||||||||    
T  6502599 ggcaatggttgatttactaatccctgacatcccccacatccctagcaggagaggagatcttgattgtttcaatagttgaatc 6502680  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 6627110 - 6627191
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  6627110 ggcaatggttgatttaccaatccctcccatcccccatatccctattagaagaggagagtttgattgtttcaatagttgaatc 6627191  T

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Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 6646859 - 6646755
Alignment:
Q  201 ccaatctgagtataaatttcgttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagtt 300  Q
    ||||||||| |||||||  | | |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| || |    
T  6646859 ccaatctgattataaatggcttcggcaatggttgatttaccgatccctgccatcccccatatccctattaggagaggacttcttgattgtttcaacaggt 6646760  T
Q  301 gaatc 305  Q
    |||||    
T  6646759 gaatc 6646755  T

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Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 6811836 - 6811702
Alignment:
Q  9 acatcatcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactgcagatatatctattttacttgctttgt 108  Q
    ||||| ||||||| ||||||||||||||||||  ||| |||||||||||||||| |||||||  |||||| || ||  || | | ||||| |||||||||    
T  6811836 acatcgtcaagtacaagaagtacccttttatgtcgaaatctttcttttaaaatctcttttcccaattcaattgtaggaatctttgttttagttgctttgt 6811737  T
Q  109 cgatatctaaaagaatattctcttgtaaagaaact 143  Q
    ||| |||||||||||  ||| ||||||||||||||    
T  6811736 cgacatctaaaagaagtttcgcttgtaaagaaact 6811702  T

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Target: chr4; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 6550723 - 6550804
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||  || |||||| ||||||||||||||||||||||||||    
T  6550723 ggcaatggttgttttaccaatccctgccatcccccaaatccctataagtagaggagattttgattgtttcaatagttgaatc 6550804  T

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Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 6769318 - 6769237
Alignment:
Q  224 ggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    ||||||||| | |||||||||||||||||||||||| ||||| | ||||| |||| |||||||||||||||||| |||||||    
T  6769318 ggcaatggtagttttaccaatccctgtcatcccccaaatcccaattaggaaaggagattttgattgtttcaataattgaatc 6769237  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 6626886 - 6626955
Alignment:
Q  9 acatcatcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaa 78  Q
    ||||| ||||||||||||||||| ||||||||  | ||||||||||||||||||||||| ||||||||||    
T  6626886 acatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaa 6626955  T

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Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 6502383 - 6502447
Alignment:
Q  17 aagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactg 81  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||    
T  6502383 aagtagaagaagtacccttttatgttgaagtctttcttttaaaataattcttcctgattcaactg 6502447  T

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Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 6503632 - 6503696
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaac 79  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||    
T  6503632 tcaagtagaagaagtacccttttatgttgaagcctttcttttaaaataactcttcctgattcaac 6503696  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 6792384 - 6792312
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactgcagata 87  Q
    ||||||| |||||||||||||||||| ||||| |||| |||||| ||| || |||||||||||| || |||||    
T  6792384 tcaagtacaagaagtacccttttatgttgaaggctttgttttaacatctctgttcctgattcaattgtagata 6792312  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 6647072 - 6647009
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaa 78  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||||   ||||||||||||||    
T  6647072 tcaagtacaagaagtacccttttattatgaagtttttcttttaaaatattttttcctgattcaa 6647009  T

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Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 6665485 - 6665419
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactg 81  Q
    ||||||| |||||||||||||||||| ||||| || ||||||||||| ||  ||||||||| |||||    
T  6665485 tcaagtagaagaagtacccttttatgttgaagcctgtcttttaaaataacgcttcctgatttaactg 6665419  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 6832348 - 6832300
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatca 63  Q
    ||||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  6832348 tcaagtataagaagtacccttttatgtcgaagtttttcttttgaaatca 6832300  T

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Target: scaffold0729 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 6470 - 6553
Alignment:
Q  222 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  6470 ttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgatcgtttcaatagttgaatc 6553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 6245 - 6317
Alignment:
Q  15 tcaagtataagaagtacccttttatgctgaagtctttcttttaaaatcacttttcctgattcaactgcagata 87  Q
    ||||||| |||||||||||||||||| ||||| |||| |||||| ||| || |||||||||||| || |||||    
T  6245 tcaagtacaagaagtacccttttatgttgaaggctttgttttaacatctctgttcctgattcaattgtagata 6317  T

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