View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6010_low_4 (Length: 321)

Name: NF6010_low_4
Description: NF6010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6010_low_4
NF6010_low_4
[»] chr3 (24 HSPs)
chr3 (12-319)||(2759246-2759563)
chr3 (11-319)||(2818588-2818906)
chr3 (11-319)||(2769100-2769418)
chr3 (27-319)||(2807314-2807616)
chr3 (11-190)||(2838528-2838707)
chr3 (24-190)||(2855738-2855904)
chr3 (24-188)||(2797405-2797569)
chr3 (12-190)||(2749027-2749205)
chr3 (24-319)||(5412930-5413235)
chr3 (24-104)||(2790411-2790491)
chr3 (49-123)||(21945658-21945732)
chr3 (49-123)||(21930455-21930529)
chr3 (49-123)||(22028034-22028108)
chr3 (49-123)||(22034551-22034625)
chr3 (49-123)||(22052767-22052841)
chr3 (49-123)||(22187022-22187096)
chr3 (218-319)||(2855599-2855700)
chr3 (49-123)||(21937187-21937261)
chr3 (49-123)||(22104757-22104831)
chr3 (49-123)||(22115119-22115193)
chr3 (73-131)||(22368262-22368320)
chr3 (49-123)||(22648516-22648590)
chr3 (255-319)||(2749280-2749344)
chr3 (91-123)||(22208096-22208128)
[»] scaffold0691 (1 HSPs)
scaffold0691 (11-319)||(5941-6259)
[»] chr8 (1 HSPs)
chr8 (53-123)||(27294586-27294656)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 2759246 - 2759563
Alignment:
Q  12 agaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaa 111  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  2759246 agaagaactatatggttggttattggagggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagcta 2759345  T
Q  112 gtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga--- 208  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||       
T  2759346 gtttttgacagccaaaaggtaacaacacagtttgattgtcaagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatgg 2759445  T
Q  209 -------ttgtcacgaaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagataa 301  Q
           |||||| ||||||||||||||||||||||||||||||| |||  | ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  2759446 cgcaattttgtcaggaaactgaagaccctcttccaaagaagttacacaaaatggatgacaggtcactgattacagaggtaaggaaatacctagaacataa 2759545  T
Q  302 gaggtatttgatattctt 319  Q
    ||||||||||||||||||    
T  2759546 gaggtatttgatattctt 2759563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 2818588 - 2818906
Alignment:
Q  11 gagaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagca 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||     
T  2818588 gagaagaactatatggttggttattggagggtgcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct 2818687  T
Q  111 agtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga-- 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||      
T  2818688 agtttttgacagccaaaaggtaacaacacagtttgattgtcgagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatg 2818787  T
Q  209 --------ttgtcacgaaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagata 300  Q
            || ||| ||| |||||||||||  || | |||  ||||||||  | |||||||||| ||||||||||||||||||||||||||||||| |||    
T  2818788 gagcaattttatcaggaagctgaagaccctgatctagagattttacgcaaaatggatgacaggttactgattatagaggtaaggaaatacctagaacata 2818887  T
Q  301 agaggtatttgatattctt 319  Q
    |||||||||| ||||||||    
T  2818888 agaggtatttaatattctt 2818906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 2769100 - 2769418
Alignment:
Q  11 gagaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagca 110  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |     
T  2769100 gagaagaattatttggttggttattggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaact 2769199  T
Q  111 agtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga-- 208  Q
    ||||| ||||||||||||||| ||  || | ||||||||||| |||||||||| ||||||||||||||||||||||||||   |||||||||||||||      
T  2769200 agtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagagggttactgataaaaatgatg 2769299  T
Q  209 --------ttgtcacgaaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagata 300  Q
            |||||| ||||||||||| ||||| | ||||| ||||| |||  | ||||||| ||||||| | ||||||||||||||||||||| || |||    
T  2769300 gagcaattttgtcaggaaactgaagaacctctgctaaagatgttacacaaaatggatgacatgtcactggtaatagaggtaaggaaatacctacaacata 2769399  T
Q  301 agaggtatttgatattctt 319  Q
    |||||||||||||||||||    
T  2769400 agaggtatttgatattctt 2769418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 2807314 - 2807616
Alignment:
Q  27 ttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagccaa 126  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||    
T  2807314 ttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaa 2807413  T
Q  127 aaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga----------ttgtcacg 216  Q
    | ||| |||||||| ||||||||||| |||||||||  ||||||||||||||||||||||||||   |  ||||||| ||||          |||||| |    
T  2807414 acggtaacaacacactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaacatgatggagcaattttgtcagg 2807513  T
Q  217 aaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagataagaggtatttgatatt 316  Q
    |||||||||||||||||||||| ||||||||||| || |||||||  ||||||||| |||| || ||| |||||||  || |||||||||||||||||||    
T  2807514 aaactgaagaccctcttccaaataagttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacctgcaacataagaggtatttgatatt 2807613  T
Q  317 ctt 319  Q
    |||    
T  2807614 ctt 2807616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 2838707 - 2838528
Alignment:
Q  11 gagaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagca 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||     
T  2838707 gagaagaaatatatggttggttattggagggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagct 2838608  T
Q  111 agtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagag 190  Q
    ||||||||| ||||||||||| ||| || | |||||||||   |||||| ||| ||||||||||||||||||||||||||    
T  2838607 agtttttgaaagccaaaaggtaacagcaaactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagag 2838528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 2855904 - 2855738
Alignment:
Q  24 tggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    ||||||||||||||| |||  | |||||||||  |||||||||||||| |||||||||||| |||| ||||| ||||||||||||| | |||||||||||    
T  2855904 tggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagc 2855805  T
Q  124 caaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagag 190  Q
    |||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  2855804 caaaaggtaacaacaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagag 2855738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 2797405 - 2797569
Alignment:
Q  24 tggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||| | |||||  ||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||| |||||     
T  2797405 tggttggttactagagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagt 2797504  T
Q  124 caaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgag 188  Q
    |||||||| |||||| | ||||||||||| |||||||||| |||||||||||||||||| |||||    
T  2797505 caaaaggtaacaacaaaatttgattgtcgtgcttgcatcacagtttctcaatcatacaccgtgag 2797569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 2749027 - 2749205
Alignment:
Q  12 agaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaa 111  Q
    ||||||||| | ||||||||||||||| |||| |||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||||||| |    
T  2749027 agaagaactgtctggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagcta 2749126  T
Q  112 gtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagag 190  Q
    |||||||| ||| |||||||  || |||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||    
T  2749127 gtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacagtttctcaatcttacactgtgagag 2749205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 5412930 - 5413235
Alignment:
Q  24 tggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    ||||||||||||||| |||||||| || || || || || |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||    
T  5412930 tggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagc 5413029  T
Q  124 caaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga----------ttgtc 213  Q
    ||||||||  || |||| ||||||||| | |||||| | | ||||||||||||||||||||||||||   |  ||||||| ||||          |||||    
T  5413030 caaaaggtatcagcacactttgattgttgtgcttgcgtaacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc 5413129  T
Q  214 acgaaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagataagaggtatttgat 313  Q
      | |||||||||| |||||||  ||| ||||| |||  | |||||| |||||||||||||||| || ||| |||||||  || ||||||||||||||||    
T  5413130 ggggaactgaagactctcttccgcagatgttacacaaaatggatgaccggtcactgattatagaagtgaggcaatacctgcaacataagaggtatttgat 5413229  T
Q  314 attctt 319  Q
    ||||||    
T  5413230 attctt 5413235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 2790411 - 2790491
Alignment:
Q  24 tggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgc 104  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||    
T  2790411 tggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 21945658 - 21945732
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||  |||| |||||||||||||| || | ||| ||||||||||| |||||| ||||||||||||||    
T  21945658 gagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagc 21945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 21930455 - 21930529
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||| | || |||||||||||||| || | ||| ||||| ||||| |||||| ||||||||||||||    
T  21930455 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 21930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22028034 - 22028108
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||| | || |||||||||||||| || | ||| ||||| ||||| |||||| ||||||||||||||    
T  22028034 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22028108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22034551 - 22034625
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||| | || |||||||||||||| || | ||| ||||| ||||| |||||| ||||||||||||||    
T  22034551 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22034625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22052767 - 22052841
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||| ||||  ||||||||||||| || | ||| ||||| ||||| |||||| ||||||||||||||    
T  22052767 gagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22052841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22187022 - 22187096
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||  |||| |||||||||||||| || | ||| ||||| ||||| |||||| ||||||||||||||    
T  22187022 gagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22187096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 2855700 - 2855599
Alignment:
Q  218 aactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagataagaggtatttgatattc 317  Q
    |||||||||||||||||||  || ||| | |||  | ||||||  ||||||||||||| | |||||| |||||||  || |||||||||||||| |||||    
T  2855700 aactgaagaccctcttccactgatgttgcacaaaatggatgaccagtcactgattatacaagtaaggcaatacctgcaacataagaggtatttggtattc 2855601  T
Q  318 tt 319  Q
    ||    
T  2855600 tt 2855599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 21937187 - 21937261
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||  |||| |||||||||||||| || | ||| ||||||||||| || ||| ||| ||||||||||    
T  21937187 gagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagc 21937261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22104757 - 22104831
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||  |||| |||||||||||||| || | ||| ||||| ||||| ||||||  |||||||||||||    
T  22104757 gagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagc 22104831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22115119 - 22115193
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||||||  |||| |||||||||||||| || | ||| |||||||||||  | ||| ||||||||||||||    
T  22115119 gagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacagc 22115193  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 22368320 - 22368262
Alignment:
Q  73 ggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagccaaaaggt 131  Q
    |||||||| || || || ||||||||||| |||||| |||||||||||| |||||||||    
T  22368320 ggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggt 22368262  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 22648590 - 22648516
Alignment:
Q  49 gagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    ||||||||||| || || |||||||| ||||| || ||||| ||||||||||||||||   |||| |||||||||    
T  22648590 gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagc 22648516  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 2749280 - 2749344
Alignment:
Q  255 gatgacaggtcactgattatagaggtaaggaaatacctagaagataagaggtatttgatattctt 319  Q
    ||||||  |||||| |||||||| || ||| |||||||  || ||||||||||||||||||||||    
T  2749280 gatgaccagtcactaattatagaagtgaggcaatacctgcaacataagaggtatttgatattctt 2749344  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 22208096 - 22208128
Alignment:
Q  91 aaaaccactcttgccaagcaagtttttgacagc 123  Q
    ||||| |||||||||||||||||||||||||||    
T  22208096 aaaacaactcttgccaagcaagtttttgacagc 22208128  T

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Target: scaffold0691 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 6259 - 5941
Alignment:
Q  11 gagaagaactatatggttggttattggagggtgcagctgagcgcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagca 110  Q
    |||| ||| |||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||||     
T  6259 gagaggaattatatggttggttattggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagct 6160  T
Q  111 agtttttgacagccaaaaggtgacaacacagtttgattgtcgagcttgcatcatagtttctcaatcatacactgtgagagaactactgataaaaatga-- 208  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||  |||||||||| ||||||| |||||||   |||| ||||| ||||      
T  6159 agtttttgacagccaaaaggtaacaacacaatttgattgtcgtgcttgcatcgcagtttctcaaacatacaccgtgagagggttactcataaacatgatg 6060  T
Q  209 --------ttgtcacgaaactgaagaccctcttccaaagaagttacgcaagttagatgacaggtcactgattatagaggtaaggaaatacctagaagata 300  Q
            |||||  ||||||||||||||||||||  | | ||||| |||  | ||||||| |||| | |||||||| || ||| |||||||  || |||    
T  6059 gagcaattttgtcgggaaactgaagaccctcttccgcaaatgttacacaaaatggatgacaagtcattaattatagaagtgaggcaatacctgcaacata 5960  T
Q  301 agaggtatttgatattctt 319  Q
    |||||||||||||||||||    
T  5959 agaggtatttgatattctt 5941  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 27294586 - 27294656
Alignment:
Q  53 gcactgtgatttcagtggtaggaatggggggtctaggcaaaaccactcttgccaagcaagtttttgacagc 123  Q
    |||||||  |||| |||||||||||||| || | ||| ||||||||||| | |||| ||||||||||||||    
T  27294586 gcactgtagtttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagc 27294656  T

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