View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6010_low_5 (Length: 250)

Name: NF6010_low_5
Description: NF6010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6010_low_5
NF6010_low_5
[»] chr1 (7 HSPs)
chr1 (34-250)||(45065664-45065882)
chr1 (57-129)||(43893372-43893443)
chr1 (37-130)||(45008048-45008141)
chr1 (59-117)||(41198016-41198074)
chr1 (41-126)||(611524-611609)
chr1 (42-121)||(47990222-47990302)
chr1 (102-130)||(50824899-50824927)
[»] chr5 (12 HSPs)
chr5 (37-124)||(15884641-15884728)
chr5 (34-138)||(8920169-8920273)
chr5 (43-122)||(35473426-35473505)
chr5 (34-127)||(21922032-21922125)
chr5 (34-124)||(41173343-41173433)
chr5 (34-127)||(14532595-14532688)
chr5 (42-131)||(29463094-29463183)
chr5 (70-131)||(38363486-38363547)
chr5 (42-119)||(42509705-42509782)
chr5 (61-121)||(37172642-37172702)
chr5 (73-129)||(5007620-5007676)
chr5 (102-134)||(41175587-41175619)
[»] chr2 (11 HSPs)
chr2 (34-131)||(6646914-6647011)
chr2 (34-134)||(2971695-2971795)
chr2 (34-127)||(6511444-6511537)
chr2 (34-127)||(32972792-32972885)
chr2 (34-128)||(33045634-33045728)
chr2 (34-128)||(40443140-40443234)
chr2 (42-127)||(30977987-30978071)
chr2 (42-128)||(40504325-40504411)
chr2 (37-123)||(10094626-10094712)
chr2 (34-119)||(44996636-44996721)
chr2 (42-93)||(14876815-14876867)
[»] chr8 (10 HSPs)
chr8 (34-129)||(3946331-3946426)
chr8 (34-128)||(32954931-32955025)
chr8 (42-123)||(44064456-44064537)
chr8 (34-122)||(37657080-37657168)
chr8 (41-128)||(39211139-39211226)
chr8 (62-121)||(15794932-15794991)
chr8 (34-121)||(17775317-17775404)
chr8 (59-121)||(40528864-40528926)
chr8 (42-121)||(999153-999232)
chr8 (65-121)||(34476278-34476334)
[»] chr7 (18 HSPs)
chr7 (34-127)||(37899100-37899193)
chr7 (34-129)||(37899414-37899509)
chr7 (34-129)||(37905925-37906020)
chr7 (41-128)||(31711823-31711910)
chr7 (34-128)||(10578158-10578252)
chr7 (35-121)||(22638777-22638863)
chr7 (34-128)||(35192160-35192254)
chr7 (37-121)||(3709063-3709147)
chr7 (36-123)||(33224916-33225003)
chr7 (35-121)||(49103482-49103568)
chr7 (36-129)||(35293209-35293302)
chr7 (42-121)||(31487290-31487369)
chr7 (41-121)||(24680862-24680942)
chr7 (34-124)||(35586667-35586753)
chr7 (71-121)||(32952344-32952394)
chr7 (61-121)||(1258570-1258631)
chr7 (102-131)||(41458754-41458783)
chr7 (102-130)||(7817794-7817822)
[»] chr4 (12 HSPs)
chr4 (34-128)||(2401701-2401795)
chr4 (36-128)||(51225411-51225503)
chr4 (42-128)||(42062518-42062604)
chr4 (53-124)||(35500690-35500761)
chr4 (42-93)||(8810670-8810722)
chr4 (80-129)||(33093002-33093050)
chr4 (34-127)||(37060406-37060499)
chr4 (105-134)||(41486024-41486053)
chr4 (102-130)||(2999270-2999298)
chr4 (99-127)||(10779982-10780010)
chr4 (99-127)||(10973591-10973619)
chr4 (34-130)||(17776524-17776620)
[»] chr6 (4 HSPs)
chr6 (42-129)||(28748211-28748298)
chr6 (37-121)||(34851580-34851664)
chr6 (59-121)||(10053052-10053114)
chr6 (62-127)||(3832582-3832646)
[»] scaffold0034 (1 HSPs)
scaffold0034 (42-127)||(22677-22762)
[»] chr3 (14 HSPs)
chr3 (34-129)||(30567845-30567940)
chr3 (34-128)||(42962386-42962480)
chr3 (42-129)||(33374592-33374679)
chr3 (34-127)||(10811226-10811319)
chr3 (42-127)||(54260091-54260176)
chr3 (70-128)||(31445997-31446055)
chr3 (41-121)||(32631452-32631531)
chr3 (34-122)||(48346917-48347005)
chr3 (41-128)||(9753316-9753403)
chr3 (48-131)||(13778537-13778620)
chr3 (59-130)||(37780427-37780498)
chr3 (42-84)||(1340112-1340154)
chr3 (62-127)||(36412242-36412307)
chr3 (80-131)||(32187279-32187331)
[»] scaffold0100 (1 HSPs)
scaffold0100 (52-84)||(44883-44915)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 34 - 250
Target Start/End: Complemental strand, 45065882 - 45065664
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 133  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||| |||||||||||||||| |||||||||    
T  45065882 tgctttggtttttgtgtcaagattcacatttctttctatattttgattgtcccacaagttgtcttacaaaatgattgttcaaataacactactctaaatt 45065783  T
Q  134 atatggagaga--aacaaaacaaaaacatttctgttcagccttacctcgtgctgatgggggtggtgggttgaagtttcacgttcgtaggagaaatgcata 231  Q
    |||||||||||  |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  45065782 atatggagagagaaacaaaacaaaaacatttttgttcagctttacctcatgctgatgggggtggtgggttgaagcttcacgttcgtagaagaaatgcata 45065683  T
Q  232 ggaaagaacgaacgtgttc 250  Q
    |||||||||||||||||||    
T  45065682 ggaaagaacgaacgtgttc 45065664  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 43893372 - 43893443
Alignment:
Q  57 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||||||||| ||||||||||||||| || ||||| ||   ||||||||||||||||||||||||||||||    
T  43893372 tcacatttctttgtatattttggttgtcccacaagttgtccg-taaaatggttgttcaaataacactcctcta 43893443  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 45008141 - 45008048
Alignment:
Q  37 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 130  Q
    |||||||||||| ||||   | |||||||||| ||||||||| |||||  | || || ||||| ||||| ||||||||||||||| ||||||||    
T  45008141 tttagtttttgtatcaatccttacatttctttgtatattttgattgtccaacaaattatcttaaaaaattgttgttcaaataacattcctctaa 45008048  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 41198016 - 41198074
Alignment:
Q  59 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaat 117  Q
    |||||||||| ||| ||||||||||| || ||||| || ||||| ||||||||||||||    
T  41198016 acatttctttgtattttttggttgtcccacaagttgtcctataagatggttgttcaaat 41198074  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 611609 - 611524
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcct 126  Q
    ||||||||||||| | ||| |||||||| ||||||||| ||||| || ||||| ||    |||||||||| |||||||||| ||||    
T  611609 gtttttgtgtcaatactcatatttctttgtatattttgattgtcccacaagttgtcaacaaaaatggttgctcaaataacattcct 611524  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 47990302 - 47990222
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctctta-taaaatggttgttcaaataaca 121  Q
    |||||||||||| | ||| |||||||| ||||||||||||||| || ||||| ||  |  ||||| |||||||||||||||    
T  47990302 tttttgtgtcaatactcatatttctttgtatattttggttgtcccacaagttgtcaaacaaaaatagttgttcaaataaca 47990222  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 50824899 - 50824927
Alignment:
Q  102 aaatggttgttcaaataacactcctctaa 130  Q
    |||||||||||||||||||||||||||||    
T  50824899 aaatggttgttcaaataacactcctctaa 50824927  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 15884728 - 15884641
Alignment:
Q  37 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 124  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||    
T  15884728 tttagtttttgtgtcaagactcacatttctttctatattttggttgtcccacaagttatcttacaaaatggttgttcaaataacactc 15884641  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 8920169 - 8920273
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 133  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||| | ||    
T  8920169 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcttattt 8920268  T
Q  134 atatg 138  Q
    |||||    
T  8920269 atatg 8920273  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 35473426 - 35473505
Alignment:
Q  43 ttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 122  Q
    ||||||| ||||| |||||||||||| ||||||||  |||| ||| ||||| || |||||||||||||||||||||||||    
T  35473426 ttttgtgccaagactcacatttctttgtatattttaattgtttcacaagttgtcctataaaatggttgttcaaataacac 35473505  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 21922125 - 21922032
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||||||||| ||||| || |||| |||||| |||||| |||||| || || || || || |||||||||||||||||||||||||||    
T  21922125 tgctttggtttttgtgccaagactcgcattcctttctctatttttgttgtcccacaaattgtcctagaaaatggttgttcaaataacactcctc 21922032  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 41173343 - 41173433
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 124  Q
    |||||| |||||||||  |||| |||||||||||| ||||||||| ||||| || || || || || |||||| |||||||||||||||||    
T  41173343 tgctttggtttttgtgctaagactcacatttctttttatattttgattgtcccacaaattatcctacaaaatgattgttcaaataacactc 41173433  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 14532595 - 14532688
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||| ||||||||| ||||| |||||||| ||||||| |||| ||||| || || ||    |||||||||||||||||||||||||||    
T  14532595 tgctttggttcttgtgtcaatattcatatttctttgtatatttaggttatctcacaaattgtcaacgaaaatggttgttcaaataacactcctc 14532688  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 29463094 - 29463183
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 131  Q
    |||||||| ||| | ||| |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||||||    
T  29463094 tttttgtgccaatactcatatttctttgtatatttaggttgtcccacaagttgtcaacaaaaatggttgttcaaataacactcctctaaa 29463183  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 38363486 - 38363547
Alignment:
Q  70 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 131  Q
    ||||||||||||||| || ||||| ||  ||||||||||||||||||||| | |||||||||    
T  38363486 tatattttggttgtcccacaagttgtcacataaaatggttgttcaaataatattcctctaaa 38363547  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 42509705 - 42509782
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataa 119  Q
    ||||| |||||| ||| ||||||||||  ||||||||||||||| ||||||||||| |  || || ||||||||||||    
T  42509705 tttttatgtcaatatttacatttctttgcatattttggttgtctaataagttctctcaacaagtgattgttcaaataa 42509782  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 37172702 - 37172642
Alignment:
Q  61 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||||||| ||||||||| ||||| ||||| || ||||| || ||||||||||||||||||    
T  37172702 atttctttgtatattttgattgtcccataaattatcttaaaatatggttgttcaaataaca 37172642  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 5007676 - 5007620
Alignment:
Q  73 attttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||||||||| || ||||| ||| | |||||||||||| ||||||||||| ||||    
T  5007676 attttggttgtcccacaagttgtctaaaaaaatggttgtttaaataacactcttcta 5007620  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 41175619 - 41175587
Alignment:
Q  102 aaatggttgttcaaataacactcctctaaatta 134  Q
    ||||||||||||||||||||||||||| |||||    
T  41175619 aaatggttgttcaaataacactcctcttaatta 41175587  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 6646914 - 6647011
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 131  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||    
T  6646914 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctctaaa 6647011  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 2971795 - 2971695
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 133  Q
    |||||| ||||||||  ||||| |||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||    
T  2971795 tgctttggtttttgtaccaagactcacatttttttctatattttggttgtcccacaagttgtcttacaaaatggttgttcaaataacactcctctaaatt 2971696  T
Q  134 a 134  Q
    |    
T  2971695 a 2971695  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 6511537 - 6511444
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||| || || ||||||||||||||||||||| |||||    
T  6511537 tgctttggtttttgtgtcaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacattcctc 6511444  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 32972885 - 32972792
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  32972885 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 32972792  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 33045634 - 33045728
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| |||| |||  ||||| |||||||||||||||||||||||||||| || || || || || |||||||||||| |||||||||||||||    
T  33045634 tgctttggtttctgtaccaagactcacatttctttctatattttggttgtcccacaaattgtcatacaaaatggttgtttaaataacactcctct 33045728  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 40443140 - 40443234
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| ||||||||||| | | | |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||||||||    
T  40443140 tgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacactcctct 40443234  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 30977987 - 30978071
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||||| | ||| |||||||||||| ||||||||| ||||| || ||||| ||  |||||||||||||||||||||||||||||    
T  30977987 tttttgtgcctagactcacatttcttt-tatattttgattgtcccacaagttgtcccataaaatggttgttcaaataacactcctc 30978071  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 40504325 - 40504411
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||||||||| | | |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||| ||||    
T  40504325 tttttgtgtcaatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacacttctct 40504411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 10094712 - 10094626
Alignment:
Q  37 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 123  Q
    |||||||||||| |||| ||  | |||||||| ||||||||| |||| ||||||||| |   | ||||||||| |||||||||||||    
T  10094712 tttagtttttgtatcaatatctatatttctttatatattttgtttgtttcataagtttttccaaaaaatggttattcaaataacact 10094626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 44996636 - 44996721
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagttctcttataaaatggttgttcaaataa 119  Q
    |||||| |||||||||||||||   ||||||||||||||||| ||| ||||| ||||| || |  || |||||||||||||||||||    
T  44996636 tgctttggtttttgtgtcaagacatacatttctttctatattcttgattgtcccataaattat-ataaaaaatggttgttcaaataa 44996721  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 14876815 - 14876867
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctata-ttttggttgtctcataagtt 93  Q
    ||||||||||||||  |||||||||||||||| |||| |||||| ||||||||    
T  14876815 tttttgtgtcaagacacacatttctttctatatttttagttgtcccataagtt 14876867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 3946331 - 3946426
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  3946331 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 3946426  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 32954931 - 32955025
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||||||||||    
T  32954931 tgctttggtttttgtgtcaagactcacatttctttctatattttggttgtactacaagttgtcctataaaatggttgttcaaataacactcctct 32955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 44064456 - 44064537
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 123  Q
    |||||||||||||| | |||||| |||||||||||| | ||||||| | ||| ||||| |||||||||||||||||||||||    
T  44064456 tttttgtgtcaagacttacatttttttctatattttagctgtctcacatgttatcttacaaaatggttgttcaaataacact 44064537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 37657080 - 37657168
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 122  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| |  ||||| || || ||||| ||||||||||||||||    
T  37657080 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtccctgaagttgtcatacaaaatagttgttcaaataacac 37657168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 39211139 - 39211226
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    ||||||||||||| | ||| |||||||| ||||||| | |||||||| ||||| ||    |||||| |||||||||||||||||||||    
T  39211139 gtttttgtgtcaatactcatatttctttgtatatttagattgtctcacaagttgtcaacaaaaatgattgttcaaataacactcctct 39211226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 15794991 - 15794932
Alignment:
Q  62 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||||| |||||||| ||||||  | ||||| ||| |||||||||||||||||||||||    
T  15794991 tttctttgtatattttagttgtcctacaagttgtctcataaaatggttgttcaaataaca 15794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 17775404 - 17775317
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||||| ||||||||||||||||  | |||||||| |||||||| ||||||  | ||||| |   ||||||| |||||||||||||||    
T  17775404 tgctttggtttttgtgtcaagatctatatttctttgtatattttagttgtcctacaagttgttacataaaatagttgttcaaataaca 17775317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 40528864 - 40528926
Alignment:
Q  59 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||||| || ||||||||||||||| |  || || |||||| ||||||||||||||||||||    
T  40528864 acatttccttgtatattttggttgtcccccaaattatcttatgaaatggttgttcaaataaca 40528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 999232 - 999153
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||| |||||||||   ||||||||||||||||| |||||||||| ||||||| |  || ||| |||||||||||||||||    
T  999232 ttttcgtgtcaagacatacatttctttctatattcttggttgtctaataagttgt-ataaaaagtggttgttcaaataaca 999153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 34476278 - 34476334
Alignment:
Q  65 ctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||| ||||||||| |||||| ||||||| ||  | |||||||||||||||||||||    
T  34476278 ctttgtatattttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 34476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 37899193 - 37899100
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  37899193 tgctttggtttttgtgccaagattcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 37899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 37899414 - 37899509
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37899414 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37899509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 37905925 - 37906020
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37905925 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37906020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 31711910 - 31711823
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| || || || || || ||||||||||||||||||||||||||||    
T  31711910 gtttttgtgccaagactcacatttctttctatattttggttgtcccacaaattatcctacaaaatggttgttcaaataacactcctct 31711823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 10578158 - 10578252
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||| || || || || || ||||| ||||||||||||||||||||||    
T  10578158 tgctttagtttttataccaagattcacatttctttctatattttggttgtcccacaaattatcctacaaaatagttgttcaaataacactcctct 10578252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 22638863 - 22638777
Alignment:
Q  35 gctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||| ||||||||| ||||| | |||||||||||||||||||| ||||| || ||||| || || |||||||||||||||||||||    
T  22638863 gctttggtttttgtgccaagactaacatttctttctatattttgattgtcccacaagttgtcctacaaaatggttgttcaaataaca 22638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 35192254 - 35192160
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| ||||||||| | ||| |||||||||||| |||||||| |||||  |||||||| || ||||||||  |||||||||||||||||||||    
T  35192254 tgctttggtttttgtgcctagactcacatttctttatatattttagttgttccataagttgtcctataaaataattgttcaaataacactcctct 35192160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 3709147 - 3709063
Alignment:
Q  37 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||||| || |||||||||||  || ||||||||    
T  3709147 tttagtttttgtgtcaagatctacatttatttatatattttagttgtctcataagttttcatataaaatggtcatttaaataaca 3709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 33224916 - 33225003
Alignment:
Q  36 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 123  Q
    |||| ||||||||| ||||| |||||||||||||||||||||  ||||| || ||||| || || |||||| ||||||||||||||||    
T  33224916 ctttggtttttgtgccaagactcacatttctttctatattttaattgtcccacaagttatcctacaaaatgattgttcaaataacact 33225003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 49103568 - 49103482
Alignment:
Q  35 gctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||| |||||||||||||||   |||||||||| ||||||||||||||| || ||||| ||| || |||||||| |||||||||||    
T  49103568 gctttggtttttgtgtcaagacatacatttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataaca 49103482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 35293209 - 35293302
Alignment:
Q  36 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||| ||||||||| | ||| ||| |||||||| ||||||||| ||||| || ||||| ||  |||||||||||||| ||||||||||||||||    
T  35293209 ctttggtttttgtgcctagactcatatttctttgtatattttgattgtcccacaagttatcccataaaatggttgtttaaataacactcctcta 35293302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 31487290 - 31487369
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||||||||||||   |||||||||| || |||||||||||  |||||||| ||  ||||| |||||||||||||||||    
T  31487290 tttttgtgtcaagacctacatttctttgtaaattttggttgttccataagttgtcacataaagtggttgttcaaataaca 31487369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 24680942 - 24680862
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctata-ttttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||| |||||||||   ||||||||||||||| |||| ||||||||||||||| || || ||| |||||||||||||||||    
T  24680942 gttttcgtgtcaagacatacatttctttctatattttttgttgtctcataagttatc-taaaaagtggttgttcaaataaca 24680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 35586753 - 35586667
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 124  Q
    |||||| ||||||||| ||||| ||||||||||    |||||||| ||||| || ||||| || || |||||| |||||||||||||||||    
T  35586753 tgctttggtttttgtgccaagactcacatttct----atattttgattgtcccacaagttatcctacaaaatgattgttcaaataacactc 35586667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 32952394 - 32952344
Alignment:
Q  71 atattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||||||||||||||||||| || || || ||||| |||||||||||||||    
T  32952394 atattttggttgtctcataaattatcctaaaaaatagttgttcaaataaca 32952344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 1258570 - 1258631
Alignment:
Q  61 atttctttctatattttggttgtctcataagttctct-tataaaatggttgttcaaataaca 121  Q
    |||||||| |||||||||||||||||| ||||| |||  | |||||| ||||||||||||||    
T  1258570 atttctttatatattttggttgtctcacaagttttctaaaaaaaatgattgttcaaataaca 1258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 41458754 - 41458783
Alignment:
Q  102 aaatggttgttcaaataacactcctctaaa 131  Q
    ||||||||||||||||||||||||||||||    
T  41458754 aaatggttgttcaaataacactcctctaaa 41458783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 7817794 - 7817822
Alignment:
Q  102 aaatggttgttcaaataacactcctctaa 130  Q
    |||||||||||||||||||||||||||||    
T  7817794 aaatggttgttcaaataacactcctctaa 7817822  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 2401701 - 2401795
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || ||||||||||||||||||||||||||||    
T  2401701 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctct 2401795  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 51225503 - 51225411
Alignment:
Q  36 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||| ||||||||| ||||| |||||||||||| ||||||||||||||| || ||||| | ||||||||| ||||||||||||||||| ||||    
T  51225503 ctttggtttttgtgccaagactcacatttctttttatattttggttgtcccacaagttgttttataaaatagttgttcaaataacacttctct 51225411  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 42062604 - 42062518
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||||| | ||| |||||||||||| ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||||||||    
T  42062604 tttttgtgcctagactcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacactcctct 42062518  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 35500761 - 35500690
Alignment:
Q  53 agattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 124  Q
    |||||||||||||||||||| |||| ||||||  | |||||  | |||||||||||||||||||||||||||    
T  35500761 agattcacatttctttctatgttttagttgtcctacaagttgccatataaaatggttgttcaaataacactc 35500690  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 8810670 - 8810722
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagtt 93  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  8810670 ttttcgtgtcaagatatacatttctttctatattcttggttgtctcataagtt 8810722  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 33093050 - 33093002
Alignment:
Q  80 ttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||||||||||| || |||||| |||||||||||||||||| ||||||    
T  33093050 ttgtctcataagttatcgtataaa-tggttgttcaaataacacacctcta 33093002  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 37060406 - 37060499
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| ||| || |||||| |||||  ||||||| || |||| |||||||||| ||||| ||    ||||||||| |||||||||||||||||    
T  37060406 tgctttggttcttatgtcaatattcatttttctttgtaaatttaggttgtctcaaaagttgtcaacaaaaatggttattcaaataacactcctc 37060499  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 41486053 - 41486024
Alignment:
Q  105 tggttgttcaaataacactcctctaaatta 134  Q
    ||||||||||||||||||||||||||||||    
T  41486053 tggttgttcaaataacactcctctaaatta 41486024  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 2999270 - 2999298
Alignment:
Q  102 aaatggttgttcaaataacactcctctaa 130  Q
    |||||||||||||||||||||||||||||    
T  2999270 aaatggttgttcaaataacactcctctaa 2999298  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 10780010 - 10779982
Alignment:
Q  99 ataaaatggttgttcaaataacactcctc 127  Q
    |||||||||||||||||||||||||||||    
T  10780010 ataaaatggttgttcaaataacactcctc 10779982  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 10973619 - 10973591
Alignment:
Q  99 ataaaatggttgttcaaataacactcctc 127  Q
    |||||||||||||||||||||||||||||    
T  10973619 ataaaatggttgttcaaataacactcctc 10973591  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 17776620 - 17776524
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 130  Q
    ||||||||||||| || ||||||  |||||| ||| || |||||  ||||| || ||||| ||  ||||||| ||||||||||||||| | ||||||    
T  17776620 tgctttagtttttctgccaagatctacatttttttgtaaattttaattgtcccacaagttgtcacataaaattgttgttcaaataacatttctctaa 17776524  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 28748211 - 28748298
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    ||||||||  |||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||| ||||    
T  28748211 tttttgtgctaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcttcta 28748298  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 34851580 - 34851664
Alignment:
Q  37 tttagtttttgtgtcaagattcacatttctttctatat-tttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||||||||||||| || ||  |||||||||| || || ||||||||||||||||||| | ||| ||||||||| |||||||||||    
T  34851580 tttagtttttgtgttaatatatacatttctttgtaaatctttggttgtctcataagttgtttta-aaaatggttcttcaaataaca 34851664  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 10053114 - 10053052
Alignment:
Q  59 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    |||||||||| |||||||| |||||| || ||||| ||  ||||||| |||||||||||||||    
T  10053114 acatttctttgtatattttagttgtcccacaagttatccaataaaatagttgttcaaataaca 10053052  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 3832582 - 3832646
Alignment:
Q  62 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    ||||||| || ||| |||||||| |||||||| ||  || ||||||||||||||||||||||||||    
T  3832582 tttctttgtaaattatggttgtcccataagttgtca-atcaaatggttgttcaaataacactcctc 3832646  T

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Target: scaffold0034 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 22677 - 22762
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||||| | ||| |||||||||||| ||||||||||||||| || ||||| ||  |||||||||||||||||||||| ||||||    
T  22677 tttttgtgcctagactcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacgctcctc 22762  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 30567940 - 30567845
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||| ||||||||| | ||| |||||||||||| |||||||||||||||  |   ||| |  ||||||||||||||||||||||||||||||||    
T  30567940 tgctttggtttttgtgcctagactcacatttctttgtatattttggttgtcctacgggttgttctataaaatggttgttcaaataacactcctcta 30567845  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 42962386 - 42962480
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    |||||| ||||||||||| | | |||||||| | | ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||| ||||    
T  42962386 tgctttggtttttgtgtctaaactcacatttatctgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacacttctct 42962480  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 33374592 - 33374679
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 129  Q
    |||||||||||||||  | ||| |||| |||||||||||||| ||| || || || |||||||||||||||||||||| | |||||||    
T  33374592 tttttgtgtcaagatctatattcctttatatattttggttgtttcacaaattgtcatataaaatggttgttcaaataatattcctcta 33374679  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 10811226 - 10811319
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||| || |||||||||| | ||| |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||    
T  10811226 tgctttggtatttgtgtcaatactcatatttctttgtatatttaggttgtcccaaaagttgtcaacaaaaatggttgttcaaataacactcctc 10811319  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 54260176 - 54260091
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    |||||||| ||| | |||||||||||| ||||||||||||||| || || || |  || ||||| |||||||||||||||||||||    
T  54260176 tttttgtgccaaaactcacatttctttttatattttggttgtcccacaaattgttctacaaaatagttgttcaaataacactcctc 54260091  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 31446055 - 31445997
Alignment:
Q  70 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    ||||||||||||||| |  ||||| ||| ||||||||||||||||||||||| ||||||    
T  31446055 tatattttggttgtccctcaagttgtctcataaaatggttgttcaaataacattcctct 31445997  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 32631531 - 32631452
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 121  Q
    ||||||||| |||||   |||||||||| ||||||||||||||  |||| ||| ||  |||||||||||||||||||||||    
T  32631531 gtttttgtgccaagacctacatttctttatatattttggttgttccata-gttgtcacataaaatggttgttcaaataaca 32631452  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 48346917 - 48347005
Alignment:
Q  34 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 122  Q
    |||||| ||||||||||||| ||||| |||||||| ||||||| ||||||| || || || ||    ||||| ||||||||||||||||    
T  48346917 tgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtcccacaaattgtcaacaaaaatagttgttcaaataacac 48347005  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 9753316 - 9753403
Alignment:
Q  41 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 128  Q
    ||||||||||||| | ||| || ||||| ||||||| ||||||| || ||||| ||    |||||| |||||||||||||||||||||    
T  9753316 gtttttgtgtcaacactcatatatctttgtatatttaggttgtcccacaagttgtcaacaaaaatgattgttcaaataacactcctct 9753403  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 13778537 - 13778620
Alignment:
Q  48 tgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 131  Q
    |||||| | ||| |||||||| ||||||| | |||||||| || || ||    |||||||||||||||||||||||||||||||    
T  13778537 tgtcaatactcatatttctttgtatatttagattgtctcacaaattgtcaacaaaaatggttgttcaaataacactcctctaaa 13778620  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 37780427 - 37780498
Alignment:
Q  59 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 130  Q
    |||||||||| ||||||||| ||||| || ||||| | | ||||||||| | ||||||||||| ||||||||    
T  37780427 acatttctttgtatattttgattgtcccacaagttatttcataaaatggatattcaaataacattcctctaa 37780498  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 1340154 - 1340112
Alignment:
Q  42 tttttgtgtcaagattcacatttctttctatattttggttgtc 84  Q
    |||||||||||||||  |||||||||| |||||||||||||||    
T  1340154 tttttgtgtcaagatctacatttctttatatattttggttgtc 1340112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 36412242 - 36412307
Alignment:
Q  62 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 127  Q
    ||||||| || ||| |||||||| |||||||| ||  |  ||||||||||||||||||||||||||    
T  36412242 tttctttgtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 32187279 - 32187331
Alignment:
Q  80 ttgtctcataagttctcttata-aaatggttgttcaaataacactcctctaaa 131  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| ||| ||||    
T  32187279 ttgtctcataagttctaatatacaaatggttgttcaaataacacacctataaa 32187331  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 44883 - 44915
Alignment:
Q  52 aagattcacatttctttctatattttggttgtc 84  Q
    |||| ||||||||||||||||||||||||||||    
T  44883 aagactcacatttctttctatattttggttgtc 44915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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