View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6010_low_6 (Length: 206)

Name: NF6010_low_6
Description: NF6010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6010_low_6
NF6010_low_6
[»] chr1 (5 HSPs)
chr1 (13-206)||(45065664-45065859)
chr1 (13-85)||(43893372-43893443)
chr1 (15-86)||(45008048-45008119)
chr1 (15-73)||(41198016-41198074)
chr1 (58-86)||(50824899-50824927)
[»] chr2 (8 HSPs)
chr2 (13-90)||(2971695-2971772)
chr2 (13-87)||(6646937-6647011)
chr2 (13-83)||(6511444-6511514)
chr2 (13-83)||(32972792-32972862)
chr2 (13-84)||(33045657-33045728)
chr2 (13-83)||(30978002-30978071)
chr2 (15-84)||(40443165-40443234)
chr2 (15-84)||(40504342-40504411)
[»] chr5 (11 HSPs)
chr5 (13-94)||(8920192-8920273)
chr5 (13-80)||(15884641-15884708)
chr5 (13-78)||(35473440-35473505)
chr5 (17-87)||(29463113-29463183)
chr5 (26-87)||(38363486-38363547)
chr5 (17-77)||(37172642-37172702)
chr5 (16-83)||(21922032-21922099)
chr5 (13-80)||(41173366-41173433)
chr5 (29-85)||(5007620-5007676)
chr5 (58-90)||(41175587-41175619)
chr5 (15-75)||(42509722-42509782)
[»] chr8 (7 HSPs)
chr8 (13-85)||(3946354-3946426)
chr8 (13-84)||(32954954-32955025)
chr8 (15-79)||(44064473-44064537)
chr8 (13-78)||(37657103-37657168)
chr8 (18-77)||(15794932-15794991)
chr8 (15-77)||(40528864-40528926)
chr8 (21-77)||(34476278-34476334)
[»] chr7 (18 HSPs)
chr7 (13-85)||(37899437-37899509)
chr7 (13-85)||(37905948-37906020)
chr7 (13-84)||(31711823-31711894)
chr7 (13-83)||(37899100-37899170)
chr7 (13-84)||(10578181-10578252)
chr7 (13-84)||(35192160-35192231)
chr7 (15-77)||(22638777-22638839)
chr7 (17-85)||(35293234-35293302)
chr7 (13-79)||(33224937-33225003)
chr7 (15-77)||(49103482-49103544)
chr7 (15-77)||(24680862-24680924)
chr7 (15-77)||(3709063-3709125)
chr7 (15-77)||(31487307-31487369)
chr7 (27-77)||(32952344-32952394)
chr7 (22-80)||(35586667-35586725)
chr7 (17-77)||(1258570-1258631)
chr7 (58-87)||(41458754-41458783)
chr7 (58-86)||(7817794-7817822)
[»] chr4 (9 HSPs)
chr4 (13-84)||(2401724-2401795)
chr4 (13-84)||(42062518-42062589)
chr4 (13-84)||(51225411-51225482)
chr4 (13-80)||(35500690-35500757)
chr4 (36-85)||(33093002-33093050)
chr4 (61-90)||(41486024-41486053)
chr4 (58-86)||(2999270-2999298)
chr4 (55-83)||(10779982-10780010)
chr4 (55-83)||(10973591-10973619)
[»] chr6 (3 HSPs)
chr6 (13-85)||(28748226-28748298)
chr6 (15-77)||(10053052-10053114)
chr6 (18-83)||(3832582-3832646)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-83)||(22692-22762)
[»] chr3 (11 HSPs)
chr3 (13-85)||(30567845-30567917)
chr3 (13-84)||(42962409-42962480)
chr3 (26-84)||(31445997-31446055)
chr3 (13-83)||(54260091-54260161)
chr3 (21-85)||(33374615-33374679)
chr3 (15-86)||(37780427-37780498)
chr3 (17-83)||(10811253-10811319)
chr3 (57-87)||(13778590-13778620)
chr3 (15-77)||(32631452-32631513)
chr3 (18-83)||(36412242-36412307)
chr3 (36-87)||(32187279-32187331)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 45065859 - 45065664
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaattatatggagaga--aacaaaacaa 110  Q
    |||||||||||||||||||||| ||||| || ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  45065859 tcacatttctttctatattttgattgtcccacaagttgtcttacaaaatgattgttcaaataacactactctaaattatatggagagagaaacaaaacaa 45065760  T
Q  111 aaacatttctgttcagccttacctcgtgctgatgggggtggtgggttgaagtttcacgttcgtaggagaaatgcataggaaagaacgaacgtgttc 206  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  45065759 aaacatttttgttcagctttacctcatgctgatgggggtggtgggttgaagcttcacgttcgtagaagaaatgcataggaaagaacgaacgtgttc 45065664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 43893372 - 43893443
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||||||| ||||||||||||||| || ||||| ||   ||||||||||||||||||||||||||||||    
T  43893372 tcacatttctttgtatattttggttgtcccacaagttgtccg-taaaatggttgttcaaataacactcctcta 43893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 45008119 - 45008048
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 86  Q
    |||||||||| ||||||||| |||||  | || || ||||| ||||| ||||||||||||||| ||||||||    
T  45008119 acatttctttgtatattttgattgtccaacaaattatcttaaaaaattgttgttcaaataacattcctctaa 45008048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 41198016 - 41198074
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaat 73  Q
    |||||||||| ||| ||||||||||| || ||||| || ||||| ||||||||||||||    
T  41198016 acatttctttgtattttttggttgtcccacaagttgtcctataagatggttgttcaaat 41198074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 50824899 - 50824927
Alignment:
Q  58 aaatggttgttcaaataacactcctctaa 86  Q
    |||||||||||||||||||||||||||||    
T  50824899 aaatggttgttcaaataacactcctctaa 50824927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 2971772 - 2971695
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatta 90  Q
    |||||||| ||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  2971772 tcacatttttttctatattttggttgtcccacaagttgtcttacaaaatggttgttcaaataacactcctctaaatta 2971695  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 6646937 - 6647011
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 87  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||    
T  6646937 tcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctctaaa 6647011  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 6511514 - 6511444
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||||||||||||||||||| || ||||| || || ||||||||||||||||||||| |||||    
T  6511514 tcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacattcctc 6511444  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 32972862 - 32972792
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  32972862 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 32972792  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 33045657 - 33045728
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||||||||||||||||||| || || || || || |||||||||||| |||||||||||||||    
T  33045657 tcacatttctttctatattttggttgtcccacaaattgtcatacaaaatggttgtttaaataacactcctct 33045728  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 30978002 - 30978071
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||| ||||||||| ||||| || ||||| ||  |||||||||||||||||||||||||||||    
T  30978002 tcacatttcttt-tatattttgattgtcccacaagttgtcccataaaatggttgttcaaataacactcctc 30978071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 40443165 - 40443234
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||||||||    
T  40443165 acatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacactcctct 40443234  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 40504342 - 40504411
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||| ||||    
T  40504342 acatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacacttctct 40504411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 8920192 - 8920273
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaattatatg 94  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||| | |||||||    
T  8920192 tcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcttatttatatg 8920273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 15884708 - 15884641
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 80  Q
    |||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||    
T  15884708 tcacatttctttctatattttggttgtcccacaagttatcttacaaaatggttgttcaaataacactc 15884641  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 35473440 - 35473505
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 78  Q
    |||||||||||| ||||||||  |||| ||| ||||| || |||||||||||||||||||||||||    
T  35473440 tcacatttctttgtatattttaattgtttcacaagttgtcctataaaatggttgttcaaataacac 35473505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 29463113 - 29463183
Alignment:
Q  17 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 87  Q
    |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||||||    
T  29463113 atttctttgtatatttaggttgtcccacaagttgtcaacaaaaatggttgttcaaataacactcctctaaa 29463183  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 38363486 - 38363547
Alignment:
Q  26 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 87  Q
    ||||||||||||||| || ||||| ||  ||||||||||||||||||||| | |||||||||    
T  38363486 tatattttggttgtcccacaagttgtcacataaaatggttgttcaaataatattcctctaaa 38363547  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37172702 - 37172642
Alignment:
Q  17 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||| ||||||||| ||||| ||||| || ||||| || ||||||||||||||||||    
T  37172702 atttctttgtatattttgattgtcccataaattatcttaaaatatggttgttcaaataaca 37172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 21922099 - 21922032
Alignment:
Q  16 catttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||| |||||| |||||| |||||| || || || || || |||||||||||||||||||||||||||    
T  21922099 cattcctttctctatttttgttgtcccacaaattgtcctagaaaatggttgttcaaataacactcctc 21922032  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 41173366 - 41173433
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 80  Q
    |||||||||||| ||||||||| ||||| || || || || || |||||| |||||||||||||||||    
T  41173366 tcacatttctttttatattttgattgtcccacaaattatcctacaaaatgattgttcaaataacactc 41173433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 5007676 - 5007620
Alignment:
Q  29 attttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||||||| || ||||| ||| | |||||||||||| ||||||||||| ||||    
T  5007676 attttggttgtcccacaagttgtctaaaaaaatggttgtttaaataacactcttcta 5007620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 41175619 - 41175587
Alignment:
Q  58 aaatggttgttcaaataacactcctctaaatta 90  Q
    ||||||||||||||||||||||||||| |||||    
T  41175619 aaatggttgttcaaataacactcctcttaatta 41175587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 42509722 - 42509782
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataa 75  Q
    ||||||||||  ||||||||||||||| ||||||||||| |  || || ||||||||||||    
T  42509722 acatttctttgcatattttggttgtctaataagttctctcaacaagtgattgttcaaataa 42509782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 3946354 - 3946426
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  3946354 tcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 3946426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 32954954 - 32955025
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||||||||||    
T  32954954 tcacatttctttctatattttggttgtactacaagttgtcctataaaatggttgttcaaataacactcctct 32955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 44064473 - 44064537
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 79  Q
    |||||| |||||||||||| | ||||||| | ||| ||||| |||||||||||||||||||||||    
T  44064473 acatttttttctatattttagctgtctcacatgttatcttacaaaatggttgttcaaataacact 44064537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 37657103 - 37657168
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 78  Q
    ||||||||||| |||||||||||||||| |  ||||| || || ||||| ||||||||||||||||    
T  37657103 tcacatttcttactatattttggttgtccctgaagttgtcatacaaaatagttgttcaaataacac 37657168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 15794991 - 15794932
Alignment:
Q  18 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    ||||||| |||||||| ||||||  | ||||| ||| |||||||||||||||||||||||    
T  15794991 tttctttgtatattttagttgtcctacaagttgtctcataaaatggttgttcaaataaca 15794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 40528864 - 40528926
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    ||||||| || ||||||||||||||| |  || || |||||| ||||||||||||||||||||    
T  40528864 acatttccttgtatattttggttgtcccccaaattatcttatgaaatggttgttcaaataaca 40528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 34476278 - 34476334
Alignment:
Q  21 ctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||| ||||||||| |||||| ||||||| ||  | |||||||||||||||||||||    
T  34476278 ctttgtatattttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 34476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 37899437 - 37899509
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37899437 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37899509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 37905948 - 37906020
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37905948 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37906020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 31711894 - 31711823
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||||||||||||||||||| || || || || || ||||||||||||||||||||||||||||    
T  31711894 tcacatttctttctatattttggttgtcccacaaattatcctacaaaatggttgttcaaataacactcctct 31711823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 37899170 - 37899100
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  37899170 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 37899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10578181 - 10578252
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||||||||||||||||||| || || || || || ||||| ||||||||||||||||||||||    
T  10578181 tcacatttctttctatattttggttgtcccacaaattatcctacaaaatagttgttcaaataacactcctct 10578252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35192231 - 35192160
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||| |||||||| |||||  |||||||| || ||||||||  |||||||||||||||||||||    
T  35192231 tcacatttctttatatattttagttgttccataagttgtcctataaaataattgttcaaataacactcctct 35192160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 22638839 - 22638777
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||||||||||||| ||||| || ||||| || || |||||||||||||||||||||    
T  22638839 acatttctttctatattttgattgtcccacaagttgtcctacaaaatggttgttcaaataaca 22638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 35293234 - 35293302
Alignment:
Q  17 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||| ||||||||| ||||| || ||||| ||  |||||||||||||| ||||||||||||||||    
T  35293234 atttctttgtatattttgattgtcccacaagttatcccataaaatggttgtttaaataacactcctcta 35293302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 33224937 - 33225003
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 79  Q
    |||||||||||||||||||||  ||||| || ||||| || || |||||| ||||||||||||||||    
T  33224937 tcacatttctttctatattttaattgtcccacaagttatcctacaaaatgattgttcaaataacact 33225003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 49103544 - 49103482
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||| ||||||||||||||| || ||||| ||| || |||||||| |||||||||||    
T  49103544 acatttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataaca 49103482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 24680924 - 24680862
Alignment:
Q  15 acatttctttctata-ttttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    ||||||||||||||| |||| ||||||||||||||| || || ||| |||||||||||||||||    
T  24680924 acatttctttctatattttttgttgtctcataagttatc-taaaaagtggttgttcaaataaca 24680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 3709125 - 3709063
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||| ||| |||||||| ||||||||||||||| || |||||||||||  || ||||||||    
T  3709125 acatttatttatatattttagttgtctcataagttttcatataaaatggtcatttaaataaca 3709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 31487307 - 31487369
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||| || |||||||||||  |||||||| ||  ||||| |||||||||||||||||    
T  31487307 acatttctttgtaaattttggttgttccataagttgtcacataaagtggttgttcaaataaca 31487369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 32952394 - 32952344
Alignment:
Q  27 atattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||||||||||||| || || || ||||| |||||||||||||||    
T  32952394 atattttggttgtctcataaattatcctaaaaaatagttgttcaaataaca 32952344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 35586725 - 35586667
Alignment:
Q  22 tttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 80  Q
    ||||||||||||| ||||| || ||||| || || |||||| |||||||||||||||||    
T  35586725 tttctatattttgattgtcccacaagttatcctacaaaatgattgttcaaataacactc 35586667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 1258570 - 1258631
Alignment:
Q  17 atttctttctatattttggttgtctcataagttctct-tataaaatggttgttcaaataaca 77  Q
    |||||||| |||||||||||||||||| ||||| |||  | |||||| ||||||||||||||    
T  1258570 atttctttatatattttggttgtctcacaagttttctaaaaaaaatgattgttcaaataaca 1258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 41458754 - 41458783
Alignment:
Q  58 aaatggttgttcaaataacactcctctaaa 87  Q
    ||||||||||||||||||||||||||||||    
T  41458754 aaatggttgttcaaataacactcctctaaa 41458783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 7817794 - 7817822
Alignment:
Q  58 aaatggttgttcaaataacactcctctaa 86  Q
    |||||||||||||||||||||||||||||    
T  7817794 aaatggttgttcaaataacactcctctaa 7817822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 2401724 - 2401795
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    ||||||||||| |||||||||||||||| || ||||| || || ||||||||||||||||||||||||||||    
T  2401724 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctct 2401795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 42062589 - 42062518
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||| ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||||||||    
T  42062589 tcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacactcctct 42062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 51225482 - 51225411
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||||||| ||||||||||||||| || ||||| | ||||||||| ||||||||||||||||| ||||    
T  51225482 tcacatttctttttatattttggttgtcccacaagttgttttataaaatagttgttcaaataacacttctct 51225411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 35500757 - 35500690
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 80  Q
    |||||||||||||||| |||| ||||||  | |||||  | |||||||||||||||||||||||||||    
T  35500757 tcacatttctttctatgttttagttgtcctacaagttgccatataaaatggttgttcaaataacactc 35500690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 33093050 - 33093002
Alignment:
Q  36 ttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||||||||| || |||||| |||||||||||||||||| ||||||    
T  33093050 ttgtctcataagttatcgtataaa-tggttgttcaaataacacacctcta 33093002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 41486053 - 41486024
Alignment:
Q  61 tggttgttcaaataacactcctctaaatta 90  Q
    ||||||||||||||||||||||||||||||    
T  41486053 tggttgttcaaataacactcctctaaatta 41486024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 2999270 - 2999298
Alignment:
Q  58 aaatggttgttcaaataacactcctctaa 86  Q
    |||||||||||||||||||||||||||||    
T  2999270 aaatggttgttcaaataacactcctctaa 2999298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 10780010 - 10779982
Alignment:
Q  55 ataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||||||||||||||||||||    
T  10780010 ataaaatggttgttcaaataacactcctc 10779982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 10973619 - 10973591
Alignment:
Q  55 ataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||||||||||||||||||||    
T  10973619 ataaaatggttgttcaaataacactcctc 10973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 28748226 - 28748298
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||| ||||    
T  28748226 tcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcttcta 28748298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 10053114 - 10053052
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||| |||||||| |||||| || ||||| ||  ||||||| |||||||||||||||    
T  10053114 acatttctttgtatattttagttgtcccacaagttatccaataaaatagttgttcaaataaca 10053052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 3832582 - 3832646
Alignment:
Q  18 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    ||||||| || ||| |||||||| |||||||| ||  || ||||||||||||||||||||||||||    
T  3832582 tttctttgtaaattatggttgtcccataagttgtca-atcaaatggttgttcaaataacactcctc 3832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 22692 - 22762
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||| ||||||||||||||| || ||||| ||  |||||||||||||||||||||| ||||||    
T  22692 tcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacgctcctc 22762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 30567917 - 30567845
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||||||||||| |||||||||||||||  |   ||| |  ||||||||||||||||||||||||||||||||    
T  30567917 tcacatttctttgtatattttggttgtcctacgggttgttctataaaatggttgttcaaataacactcctcta 30567845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 42962409 - 42962480
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    |||||||| | | ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||| ||||    
T  42962409 tcacatttatctgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacacttctct 42962480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 31446055 - 31445997
Alignment:
Q  26 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 84  Q
    ||||||||||||||| |  ||||| ||| ||||||||||||||||||||||| ||||||    
T  31446055 tatattttggttgtccctcaagttgtctcataaaatggttgttcaaataacattcctct 31445997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 54260161 - 54260091
Alignment:
Q  13 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||||||||||| ||||||||||||||| || || || |  || ||||| |||||||||||||||||||||    
T  54260161 tcacatttctttttatattttggttgtcccacaaattgttctacaaaatagttgttcaaataacactcctc 54260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 33374615 - 33374679
Alignment:
Q  21 ctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 85  Q
    |||| |||||||||||||| ||| || || || |||||||||||||||||||||| | |||||||    
T  33374615 ctttatatattttggttgtttcacaaattgtcatataaaatggttgttcaaataatattcctcta 33374679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 37780427 - 37780498
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 86  Q
    |||||||||| ||||||||| ||||| || ||||| | | ||||||||| | ||||||||||| ||||||||    
T  37780427 acatttctttgtatattttgattgtcccacaagttatttcataaaatggatattcaaataacattcctctaa 37780498  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 10811253 - 10811319
Alignment:
Q  17 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||    
T  10811253 atttctttgtatatttaggttgtcccaaaagttgtcaacaaaaatggttgttcaaataacactcctc 10811319  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 13778590 - 13778620
Alignment:
Q  57 aaaatggttgttcaaataacactcctctaaa 87  Q
    |||||||||||||||||||||||||||||||    
T  13778590 aaaatggttgttcaaataacactcctctaaa 13778620  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 32631513 - 32631452
Alignment:
Q  15 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 77  Q
    |||||||||| ||||||||||||||  |||| ||| ||  |||||||||||||||||||||||    
T  32631513 acatttctttatatattttggttgttccata-gttgtcacataaaatggttgttcaaataaca 32631452  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 36412242 - 36412307
Alignment:
Q  18 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 83  Q
    ||||||| || ||| |||||||| |||||||| ||  |  ||||||||||||||||||||||||||    
T  36412242 tttctttgtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 32187279 - 32187331
Alignment:
Q  36 ttgtctcataagttctcttata-aaatggttgttcaaataacactcctctaaa 87  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| ||| ||||    
T  32187279 ttgtctcataagttctaatatacaaatggttgttcaaataacacacctataaa 32187331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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