View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6011_high_7 (Length: 266)
Name: NF6011_high_7
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 2564247 - 2563997
Alignment:
| Q |
4 |
gcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattcttt |
103 |
Q |
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| T |
2564247 |
gcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattcttt |
2564148 |
T |
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| Q |
104 |
ctttggaacta---atgtttagtaaaagatcattagtttgttatatgtatctgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttg |
200 |
Q |
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| T |
2564147 |
ctttggaactactaatgtttagtaaaagatcattagtttgttatatgtatgtgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttg |
2564048 |
T |
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| Q |
201 |
ttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtg |
251 |
Q |
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| T |
2564047 |
ttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtg |
2563997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 2573944 - 2573853
Alignment:
| Q |
154 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggtta |
245 |
Q |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggtta |
2573853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2574132 - 2574055
Alignment:
| Q |
1 |
ctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcct |
78 |
Q |
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|||||||||| |||||||||||||||||| ||||| | |||| ||| ||||| || | | |||| ||||| ||||||| |
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| T |
2574132 |
ctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattcct |
2574055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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