View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6011_low_1 (Length: 485)
Name: NF6011_low_1
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 7035879 - 7036351
Alignment:
| Q |
1 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035879 |
ctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaaccaactggtgagca |
7035978 |
T |
|
| Q |
101 |
aatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattat-----tttattttattttgggt |
194 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7035979 |
aatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttattttattttgggt |
7036078 |
T |
|
| Q |
195 |
gtggagttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaatt |
294 |
Q |
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| T |
7036079 |
gtggagttggttgggttgcacaactagtttgagctgaggattagagttggaggccccgggtacaaacccgtgtaaaggagaaagattctaacaaccaatt |
7036178 |
T |
|
| Q |
295 |
actaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcattt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036179 |
actaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcattt |
7036278 |
T |
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| Q |
395 |
cattttctatatccccaaattgagtttaaaaactatttgccatttatttatactaattaaaattgcccctatt |
467 |
Q |
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| T |
7036279 |
cattttctacatccccaaattgagtttaaaaactatttgcgatttatttatactaattaaaattgcccctatt |
7036351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 7897119 - 7897580
Alignment:
| Q |
1 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897119 |
ctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagca |
7897218 |
T |
|
| Q |
101 |
aatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattattttattttattttgggtgtgga |
199 |
Q |
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| T |
7897219 |
aatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccatattat-----tttattttgggtgtgga |
7897313 |
T |
|
| Q |
200 |
gttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaattactaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
7897314 |
gttggttgggttgcacaactagtttgagctgaggattaaagttggaggccccgggtgcaaacccgtgtaaaggagaaagataccaacaaccaattactaa |
7897413 |
T |
|
| Q |
300 |
cattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatttcattt |
399 |
Q |
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|||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7897414 |
cattggcattttaaacaaaaaagaaaattaggacttcaaaagatt-aataaatttcaaattatctgctttgggatttctcccaaaaccatcatttcattt |
7897512 |
T |
|
| Q |
400 |
tctatatccccaaattgagtttaaaaactatttgccatttatttatactaattaaaattgcccctatt |
467 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
7897513 |
tctacatccccaaattgagtttaaaaactatttggcatttatttatactaattaaaatttcccctatt |
7897580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
42 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
110 |
Q |
| |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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