View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6011_low_10 (Length: 258)

Name: NF6011_low_10
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6011_low_10
NF6011_low_10
[»] chr5 (8 HSPs)
chr5 (1-93)||(9888791-9888883)
chr5 (1-93)||(29289488-29289580)
chr5 (1-86)||(23927955-23928040)
chr5 (8-93)||(16049190-16049275)
chr5 (3-89)||(26363221-26363308)
chr5 (38-89)||(10540654-10540705)
chr5 (38-89)||(35667357-35667408)
chr5 (53-89)||(41359436-41359472)
[»] chr1 (11 HSPs)
chr1 (1-93)||(14795577-14795669)
chr1 (1-93)||(14804451-14804543)
chr1 (1-93)||(50049950-50050042)
chr1 (1-93)||(51251123-51251215)
chr1 (1-93)||(8059154-8059246)
chr1 (1-85)||(19584926-19585010)
chr1 (1-93)||(40709695-40709787)
chr1 (1-93)||(31200443-31200535)
chr1 (1-93)||(21968866-21968959)
chr1 (38-89)||(8049476-8049527)
chr1 (22-88)||(39330648-39330714)
[»] chr7 (7 HSPs)
chr7 (1-93)||(40210151-40210243)
chr7 (4-93)||(33438626-33438715)
chr7 (1-93)||(36107568-36107660)
chr7 (1-93)||(24954752-24954844)
chr7 (1-93)||(41987222-41987314)
chr7 (22-89)||(3407376-3407443)
chr7 (38-92)||(3937349-3937403)
[»] chr6 (6 HSPs)
chr6 (1-93)||(8770433-8770525)
chr6 (4-93)||(3101044-3101133)
chr6 (3-93)||(31834068-31834158)
chr6 (1-61)||(30125368-30125428)
chr6 (1-89)||(6940451-6940540)
chr6 (38-86)||(18999328-18999376)
[»] chr2 (6 HSPs)
chr2 (1-93)||(22416954-22417046)
chr2 (1-93)||(37575601-37575693)
chr2 (1-93)||(30356978-30357070)
chr2 (1-93)||(34899675-34899767)
chr2 (38-89)||(8371458-8371509)
chr2 (38-89)||(8423316-8423367)
[»] chr8 (7 HSPs)
chr8 (1-86)||(2716-2801)
chr8 (1-93)||(232125-232217)
chr8 (1-93)||(708536-708628)
chr8 (1-93)||(745748-745840)
chr8 (1-93)||(869643-869735)
chr8 (1-93)||(31627691-31627783)
chr8 (1-93)||(33365140-33365232)
[»] chr4 (5 HSPs)
chr4 (1-93)||(23723340-23723432)
chr4 (1-93)||(27925299-27925391)
chr4 (1-93)||(32951299-32951391)
chr4 (1-93)||(42547508-42547600)
chr4 (38-86)||(28044059-28044107)
[»] chr3 (6 HSPs)
chr3 (1-93)||(4774334-4774426)
chr3 (1-93)||(39085235-39085327)
chr3 (1-93)||(48433047-48433139)
chr3 (1-93)||(12026072-12026165)
chr3 (38-89)||(53592840-53592891)
chr3 (22-88)||(28700253-28700319)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-93)||(397345-397437)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9888883 - 9888791
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9888883 ttcttcctccctatgaaaatgaaattaaaatttggaaattattggataagttggtttattggatatgggtccggttttacccaaaacccatta 9888791  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29289580 - 29289488
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  29289580 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaacccatta 29289488  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23928040 - 23927955
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaa 86  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  23928040 ttcttcctccctgtgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaa 23927955  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 16049190 - 16049275
Alignment:
Q  8 tccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  16049190 tccctatgaaaatgaaattaaaatttgaaaattattgtgtaagttggtttattgggtatgggtccagttttacccaaaacccatta 16049275  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 26363221 - 26363308
Alignment:
Q  3 cttcctccctatgagaatgaaattaaaatttggaa-attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||||||||| ||||||| ||||| |  ||| |||||||| |||||  ||||||||||| |||||  |||||||||||||||||    
T  26363221 cttcctccctatgaaaatgaaaataaaaatatgaacattattgggtaagtgagtttattgggtctgggtatggttttacccaaaaccc 26363308  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 10540654 - 10540705
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||| |||||||||||| |||||  |||||||||||||||||    
T  10540654 attattgggtaagtgggtttattgggtctgggtatggttttacccaaaaccc 10540705  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 35667408 - 35667357
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||| |||||||||||| |||||  |||||||||||||||||    
T  35667408 attattgggtaagtgggtttattgggtttgggtttggttttacccaaaaccc 35667357  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 41359436 - 41359472
Alignment:
Q  53 ggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  41359436 ggtttattgggtatgagtctggttttacccaaaaccc 41359472  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14795669 - 14795577
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14795669 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 14795577  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14804543 - 14804451
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14804543 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 14804451  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 50050042 - 50049950
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  50050042 ttcttcctccctataaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttactcaaaacccatta 50049950  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 51251123 - 51251215
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  51251123 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaatccatta 51251215  T

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Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8059246 - 8059154
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  8059246 ttcttcctccctatgaaaatgaaattaaaatttggaaattattaggtaagttggtttattgagtatgggtcctgttttacccaaaacccatta 8059154  T

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Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19584926 - 19585010
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaa 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  19584926 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgagttcggttttacccaaa 19585010  T

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Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40709787 - 40709695
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  40709787 ttcttcttccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatggatccagttttacccaaaacccatta 40709695  T

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Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31200443 - 31200535
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||||||||||| ||||||    
T  31200443 ttcttcctccctatgaaaatgaaattaaaatttagaaattattgggtaaattggtttattgggtatgagtccgattttacccaaaatccatta 31200535  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21968959 - 21968866
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaatta-ttggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||| | ||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| |||||||| |||||||||||    
T  21968959 ttcttcttccctataaaaatgaaattaaaatttgaaaattaattgggtaagttggtttattgtgtatgggtccagttttacctaaaacccatta 21968866  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 8049527 - 8049476
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||||||||| |||||||||||| |||||| || ||||| ||||||||    
T  8049527 attattggataagtgggtttattgggtctgggtctggctttactcaaaaccc 8049476  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 39330714 - 39330648
Alignment:
Q  22 aaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacc 88  Q
    |||| ||||| || |||||||||| ||||| |||||| || || |||||| ||||||||||||||||    
T  39330714 aaataaaaatatgaaaattattgggtaagtgggtttaatgtgtttgggtctggttttacccaaaacc 39330648  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40210243 - 40210151
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  40210243 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttatccaaaacccatta 40210151  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 33438715 - 33438626
Alignment:
Q  4 ttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33438715 ttcctccctatgaaaatgaaattaaaatttagaaattattgggtaagttggtttattgggtatgggtctggttttacccaaaacccatta 33438626  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36107568 - 36107660
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||    
T  36107568 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggttcagttttacccaaaacccatta 36107660  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 24954752 - 24954844
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||    
T  24954752 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggttcagttttacccaaaacctatta 24954844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41987222 - 41987314
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  41987222 ttcttcttccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaatccatta 41987314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 3407443 - 3407376
Alignment:
Q  22 aaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||| ||||| || |||||||| ||||||| |||||||||||| |||||| |||||||||| ||||||    
T  3407443 aaataaaaatatgaaaattattcgataagtgggtttattgggtctgggtctggttttaccccaaaccc 3407376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 3937349 - 3937403
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaacccatt 92  Q
    |||||||| ||||| ||||||||||||||| |||  |||||||||||||||||||    
T  3937349 attattgggtaagtgggtttattgggtatgagtcttgttttacccaaaacccatt 3937403  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8770433 - 8770525
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8770433 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaacccatta 8770525  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 3101044 - 3101133
Alignment:
Q  4 ttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  3101044 ttcctctctatgaaaatgaaattaaaatttggaaattattgggtaaattggtttattgggtatggatccggttttacccaaaacccatta 3101133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 31834158 - 31834068
Alignment:
Q  3 cttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||| ||||||| ||||| |  || |||||||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  31834158 cttcctccctatgaaaatgaaaataaaaatatgacattattggataagtgggtttattgggtctgggtctggttttacccaaaacccatta 31834068  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30125428 - 30125368
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattg 61  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  30125428 ttcttcctccctatgaaaatgaaattagaatttggaaattattgggtaagttggtttattg 30125368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6940451 - 6940540
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatt-tggaaattattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||||| ||||||| ||||| | | || |||||||| ||||| |||||||||||| || ||| |||||||||||||||||    
T  6940451 ttcttccttcctatgaaaatgaaaataaaaatatagacattattgggtaagtgggtttattgggtctgagtctggttttacccaaaaccc 6940540  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18999376 - 18999328
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaa 86  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||||||    
T  18999376 attattgggtaagtgggtttattgggtttgggtctggttttacccaaaa 18999328  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22416954 - 22417046
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22416954 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgagtaagttggtttattgggtatgggtccggttttacccaaaacccatta 22417046  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37575693 - 37575601
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  37575693 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggttaattgagtatgggtccggttttacccaaaacccatta 37575601  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30357070 - 30356978
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  30357070 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttactcaaaacccatta 30356978  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34899675 - 34899767
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  34899675 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgagtccagttttacccaaaacccatta 34899767  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 8371509 - 8371458
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||| |||||||||||| |||||  |||||||||||||||||    
T  8371509 attattgggtaagtgggtttattgggtttgggtttggttttacccaaaaccc 8371458  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 8423367 - 8423316
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||| |||||||||||| |||||  |||||||||||||||||    
T  8423367 attattgggtaagtgggtttattgggtttgggtttggttttacccaaaaccc 8423316  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2801 - 2716
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaa 86  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2801 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaa 2716  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 232217 - 232125
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  232217 ttctttctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaactcatta 232125  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 708628 - 708536
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  708628 ttctttctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaactcatta 708536  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 745840 - 745748
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  745840 ttctttctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaactcatta 745748  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 869735 - 869643
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  869735 ttctttctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgggtatgggtccggttttacccaaaactcatta 869643  T

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Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31627783 - 31627691
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31627783 ttcttcttccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggtccagttttacccaaaacccatta 31627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33365232 - 33365140
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33365232 ttcttcctctctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtatgggttcggttttacccaaaatccatta 33365140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 23723340 - 23723432
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||    
T  23723340 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattggatatgtgtccggttttacccaaaacccatta 23723432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27925391 - 27925299
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  27925391 ttcttcttccctatgaaaatgaaattaaaatttgaaaattattgagtaagtttgtttattgggtatgggtccagttttacccaaaacccatta 27925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32951391 - 32951299
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  32951391 ttcttcctccctatgaaaatgaaattaaaatttaaaaattattgggtaaattggtttattgggtatgagtccggttttacccaaaatccatta 32951299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42547508 - 42547600
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||  |||| |||||||| |||||||||||    
T  42547508 ttcttcctccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattgggtataagtccagttttacctaaaacccatta 42547600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 28044059 - 28044107
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaa 86  Q
    |||||||| ||||| |||||||||||| |||||  ||||||||||||||    
T  28044059 attattgggtaagtgggtttattgggtctgggtatggttttacccaaaa 28044107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4774334 - 4774426
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  4774334 ttcttcctccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgagtatgggttcggttttacccaaaacccatta 4774426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39085235 - 39085327
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| |||||||||||||||| |||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  39085235 ttcttcctccctatgaaaatgaaattaaaatttagaaattcttgagtaagttggtttattgggtatgggttcggttttacccaaaacccatta 39085327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48433047 - 48433139
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||    
T  48433047 ttcttcctccctatgaaaatgaaattaaaatttaaaaattattgggtaagttggtttattggatatgagtccagttttacccaaaacccatta 48433139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12026072 - 12026165
Alignment:
Q  1 ttcttcctccctatgagaatgaaatt-aaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    ||||| |||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  12026072 ttctttctccctatgaaaatgaaaatgaaaatttggaaattattgggtaagttggtttattgggtataggttcggttttacccaaaacccatta 12026165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 53592840 - 53592891
Alignment:
Q  38 attattggataagttggtttattgggtatgggtccggttttacccaaaaccc 89  Q
    |||||||| ||||| |||||||||||| |||||  |||||||||||||||||    
T  53592840 attattgggtaagtgggtttattgggtctgggtatggttttacccaaaaccc 53592891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 28700253 - 28700319
Alignment:
Q  22 aaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacc 88  Q
    ||||||||||||||  |||||| | ||||| |||||||| |||||| ||| |||||||||| |||||    
T  28700253 aaattaaaatttgggtattattaggtaagtgggtttatttggtatgagtctggttttacccgaaacc 28700319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 397345 - 397437
Alignment:
Q  1 ttcttcctccctatgagaatgaaattaaaatttggaaattattggataagttggtttattgggtatgggtccggttttacccaaaacccatta 93  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||  |||||||||||||||||||    
T  397345 ttcttcttccctatgaaaatgaaattaaaatttgaaaattattgggtaagttggtttattggatatgggtccaattttacccaaaacccatta 397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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