View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6011_low_14 (Length: 238)
Name: NF6011_low_14
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2564415 - 2564638
Alignment:
| Q |
1 |
acctcaaccatggtactattcattttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564415 |
acctcaaccatggtactattcattttctccaaaatcctaaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaatta |
2564514 |
T |
|
| Q |
101 |
aagcctttgcaaaatcacaggtattttgtacactaatttatgactc-taagacattaagcccatttctttattattttggttcataattattataactaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564515 |
aagcctttgcaaaatcacaggtattttgtacactaatttatgactcttaagacatttagcccatttctttattattttggttcataattattataactaa |
2564614 |
T |
|
| Q |
200 |
aaattgaatgtgtacataacatag |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
2564615 |
aaattgaatgtgtacataacatag |
2564638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 2574310 - 2574433
Alignment:
| Q |
1 |
acctcaaccatggtactattcattttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||| || |||| | ||||||| |||| |
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| T |
2574310 |
acctcaaccatggtactattcattttctccaaaatcttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagatta |
2574409 |
T |
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| Q |
101 |
aagcctttgcaaaatcacaggtat |
124 |
Q |
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|||||||||||||| |||||||| |
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| T |
2574410 |
gagcctttgcaaaattacaggtat |
2574433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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