View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6011_low_2 (Length: 351)
Name: NF6011_low_2
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 330483 - 330820
Alignment:
| Q |
1 |
aaactacattagaaaaccttccctcttaggctttccgctctgtctaggggaaaggtttttagacgtgggtcccatcctaaaacaactttctttcctcact |
100 |
Q |
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| T |
330483 |
aaactacataataaaaccttcc-tctcaagctttccgcgcagtctagggggaaggtttttagacgtgggtcccaccctaaaacaactttctttcctcact |
330581 |
T |
|
| Q |
101 |
aacacatcaaccaaatgatgaaagcacacatttcaataaactttcattctttggtgctttctatccattgcctttccttagaaccaaacactgtcttatg |
200 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
330582 |
aacacatcaaccaaacgatgaaagcacgcatttcaataaactttcattctttggtgctttctatccattgcctttccttagaaccaaacattgtcttatg |
330681 |
T |
|
| Q |
201 |
ctaaattgaaaaaggcacaagtatattgttctaaatttattttataaactctgacttttgtatgtatgtgtgctataaattattttatttaaatatgggg |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
330682 |
ctaaattgaaaagagcacaagtatattgttctaaatttattttataaactctgacttttgtatgtatatgtactataaattattttatttaaatatgggg |
330781 |
T |
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| Q |
301 |
tcatttttgtcatttgatagataaatatctttctttcat |
339 |
Q |
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| T |
330782 |
tcatttttgtcatttgatagataaatatctttctttcat |
330820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 6955589 - 6955484
Alignment:
| Q |
85 |
actttctttcctcactaacacatcaaccaaatgatgaaagcacacatttcaataaactttcattctttggtgctttctatccattgcctttccttagaac |
184 |
Q |
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| T |
6955589 |
actttctttccttactgacagagcatccaaacaatggaagcacaattttccataaactttctttccttgctgctttccatccaccctctttccttagaac |
6955490 |
T |
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| Q |
185 |
caaaca |
190 |
Q |
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|||||| |
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| T |
6955489 |
caaaca |
6955484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 5216879 - 5216937
Alignment:
| Q |
87 |
tttctttcctcactaacacatcaaccaaatgatgaaagcacacatttcaataaactttc |
145 |
Q |
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|||||||||||||| ||| | |||||||| |||||||| |||||||| |||||||||| |
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| T |
5216879 |
tttctttcctcacttacatagcaaccaaacaatgaaagctcacatttccataaactttc |
5216937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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