View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6011_low_3 (Length: 313)
Name: NF6011_low_3
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 48857209 - 48856908
Alignment:
| Q |
4 |
tcattgatgatcatgatatatagcaatataaaagataatacattgatagatagatatgcaagaaacagaccaacatttatttatttatagacacgacgac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48857209 |
tcattgatgatcatgatatatagcaatataaaagataatac-tacattgatagatatgcaagaaacagaccaac----gtttatttatagacacgacgac |
48857115 |
T |
|
| Q |
104 |
atgaaatgttgctgagccaaaacctcaacttctggccacgtcatgatatcaccggagcaactccacgacgaatcactctccatcagctccggcaattcaa |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48857114 |
atgaaatgttgctgcgccaaaacctcaacttctggccacgtcatgatatcaccggagcaactccacgacgaatcactctccatcagctccggcaattcaa |
48857015 |
T |
|
| Q |
204 |
tctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaagccttcatcatact---cgccgccttagctgccgccgcctgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
48857014 |
tctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaagccttcatcatactcgccgccgccttagctgccgcagcctgaat |
48856915 |
T |
|
| Q |
301 |
gtctctg |
307 |
Q |
| |
|
||||||| |
|
|
| T |
48856914 |
gtctctg |
48856908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 9776314 - 9776348
Alignment:
| Q |
188 |
agctccggcaattcaatctcaccccaaaaatcatc |
222 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9776314 |
agctccggcaactcaatctcaccccaaaaatcatc |
9776348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University