View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6011_low_9 (Length: 260)
Name: NF6011_low_9
Description: NF6011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6011_low_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47423977 - 47424199
Alignment:
| Q |
18 |
attttatgttaatgttggtgcatgaaattgttctgttgtatgagatataagagaagttaagcactaaatattgtgctgtgagtttagaaattatcatagg |
117 |
Q |
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| T |
47423977 |
attttatgttaatgttggtgcatgaaattgttctgttgtatgagatataagagaagttaagcactaaatattgtgctgtgagtttagaaattatcatagg |
47424076 |
T |
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| Q |
118 |
caagatcaagtaagtataagggcatttcgggataaagttctcgctacatatagcagtcctcgaaataaaaagttataaaataactcatgaaaggatgtaa |
217 |
Q |
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| T |
47424077 |
caagatcaagtaagtataagggcatttcgggataaagttctcgctacatatagcagtcctcgaaataaaaagttataaaataactcatgaaaggatgtaa |
47424176 |
T |
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| Q |
218 |
gagatatagagtataaaatgata |
240 |
Q |
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| T |
47424177 |
gagatatagagtataaaatgata |
47424199 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 22369495 - 22369524
Alignment:
| Q |
231 |
taaaatgatactccctccgtcccaaattgt |
260 |
Q |
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| T |
22369495 |
taaaatgatactccctccgtcccaaattgt |
22369524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 8247127 - 8247156
Alignment:
| Q |
231 |
taaaatgatactccctccgtcccaaattgt |
260 |
Q |
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| T |
8247127 |
taaaatgatactccctccgtcccaaattgt |
8247156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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