View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6012_low_1 (Length: 533)
Name: NF6012_low_1
Description: NF6012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6012_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 53090257 - 53090045
Alignment:
| Q |
14 |
atatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgttgataa |
113 |
Q |
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| T |
53090257 |
atatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgttgataa |
53090158 |
T |
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| Q |
114 |
catttctca-------gtttgacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgct--atatctcccaataaaatatatagcgaatg |
204 |
Q |
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| T |
53090157 |
catttctcatttctcagtttaacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgctatatatctcccaataaaatatatagcgaatg |
53090058 |
T |
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| Q |
205 |
attcatgaatgta |
217 |
Q |
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| T |
53090057 |
attcacgaatgta |
53090045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 222 - 378
Target Start/End: Complemental strand, 53089964 - 53089819
Alignment:
| Q |
222 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctatggtgcgacatgaatgatagatatactcaaattatta |
321 |
Q |
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| T |
53089964 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctc-----------gaatgatagatatactcaaattatta |
53089876 |
T |
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| Q |
322 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
378 |
Q |
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| T |
53089875 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
53089819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 371 - 496
Target Start/End: Complemental strand, 53089765 - 53089640
Alignment:
| Q |
371 |
aaaaacattttgggcatcttagagattaataaggattatctgacagtctaatttcctcatgatcacttgtttatggtttaaaatttacacttccacacat |
470 |
Q |
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| T |
53089765 |
aaaatcattttgggcatcttagagattaattaggattatctgacggtctaatttcctcatgatcacttgtttatggtttaaaatttacacttccacacat |
53089666 |
T |
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| Q |
471 |
gattaatagtttattgttgttcgtct |
496 |
Q |
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| T |
53089665 |
gattaataatttattgttgttcgtct |
53089640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 53089624 - 53089587
Alignment:
| Q |
496 |
tatagattcacaatggagcaaatgaaaatggggttgat |
533 |
Q |
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| T |
53089624 |
tatagattcacaatggagcaaatgaaaatggggttgat |
53089587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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