View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6013_high_1 (Length: 681)
Name: NF6013_high_1
Description: NF6013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6013_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 9 - 663
Target Start/End: Complemental strand, 46847649 - 46846995
Alignment:
| Q |
9 |
agcagagattcttatgaaaaatatggaaatggagccggatggagctatttggggttctcttcttagtgcttgtaaggttcatggacgcgttgagttcggt |
108 |
Q |
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| T |
46847649 |
agcagagattcttatgaaaaatatggaaatggagccggatggagctatttggggttctcttcttagtgcttgtaaggctcatggacgcgttgagttcggt |
46847550 |
T |
|
| Q |
109 |
gaatatgtagcagaacgcctctttcaattagagccagaaaatgcaggggcatttgtgcttctgtcaaatatatatgcaggagctggtagatgggacgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847549 |
gaatatgtagcagaacgcctctttcaattagagccagaaaatgcaggggcatttgtgcttctgtcaaatatatatgcaggagctggtagatgggacgatg |
46847450 |
T |
|
| Q |
209 |
tagcaaggataagaacaaggttaaatgacaaaggaatgaagaaagttcccggttgcacctctatagagattgatggtgatgttcatgaattccttgtcgg |
308 |
Q |
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| T |
46847449 |
tagcaaggataagaacaaggttaaatgacaaaggaatgaagaaagttcccggttgcacctctatagagattgatggtgatgttcatgagttccttgtcgg |
46847350 |
T |
|
| Q |
309 |
tgataagttccacccggaatgcaacaatatttataaaatgttgaatgaggtagataagcttttggaggaaaatggatttgtgcccgatacttctgaggta |
408 |
Q |
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| T |
46847349 |
tgataagttccacccggaatgcaacaatatttataaaatgttgaacgaggtagataagcttttggaggaaaatggatttgtgcccaatacttctgaggta |
46847250 |
T |
|
| Q |
409 |
ctttatgatatggatgaagagtggaaggaaggggctttgagtcaacacagtgagaagctggctattagtttcggtttgataaaaacaaagcctggaacta |
508 |
Q |
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| T |
46847249 |
ctttatgatatggatgaagagtggaaggaaggggctttgagtcaacacagtgagaagctggctattagtttcggtttgataaaaacaaagcctggaacta |
46847150 |
T |
|
| Q |
509 |
caattcggatcgtgaagaatcttcgggtttgtggaaactgtcattcagctaccaagcttatatctaagattttcaatagggaaataattgcaagagatag |
608 |
Q |
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| T |
46847149 |
caattcggatcgtgaagaatcttcgggtttgtggaaactgtcattcagctaccaagcttatatctaagattttcaatagggaaataattgcaagagatag |
46847050 |
T |
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| Q |
609 |
aaaccgttttcaccattttaaagatgggttttgctcatgtaatgattgctggtga |
663 |
Q |
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| T |
46847049 |
aaaccgttttcaccattttaaagatgggttttgctcatgtaatgattgctggtga |
46846995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 589 - 654
Target Start/End: Original strand, 50391710 - 50391775
Alignment:
| Q |
589 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
654 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50391710 |
gaaaaaattgcaagagatagaaaccattttcaccattttaaagatgggttttgctcatgtaatgat |
50391775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 589 - 654
Target Start/End: Complemental strand, 48304563 - 48304498
Alignment:
| Q |
589 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
654 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48304563 |
gaaaaaattgcaagagatacaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
48304498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 36359172 - 36359230
Alignment:
| Q |
596 |
ttgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
654 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36359172 |
ttgcaagagatacaaaccgttttcaccattttaaagatgagttttgctcatgtaatgat |
36359230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 589 - 654
Target Start/End: Complemental strand, 38950837 - 38950772
Alignment:
| Q |
589 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
654 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
38950837 |
gaaaaaattgcaagagatacaaaccgttatcaccattttaaagatgagttttgctcatgtaatgat |
38950772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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