View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6013_high_4 (Length: 541)
Name: NF6013_high_4
Description: NF6013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6013_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 348 - 523
Target Start/End: Original strand, 6927362 - 6927537
Alignment:
| Q |
348 |
ttgatttgcagggctatcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatat |
447 |
Q |
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| T |
6927362 |
ttgatttgcaggtctttcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatat |
6927461 |
T |
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| Q |
448 |
aactaaattattttgtctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttg |
523 |
Q |
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| T |
6927462 |
aactaaattattttgtctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttg |
6927537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6927180 - 6927308
Alignment:
| Q |
1 |
ctgattgtggtaaatcaaaagaaatatgtttattgtgtaatactacatccgtccttaaatatagtactatgttaattgttgactaagtaacttgaaatta |
100 |
Q |
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| T |
6927180 |
ctgattatggaaaatcaaaagaaatatgtttattctgtcatactacatccgtccctaaatatagtact-------ctgttgactaaattacttggaatta |
6927272 |
T |
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| Q |
101 |
atcaatgacaaaaaatttggtagtagtaataaatttgt |
138 |
Q |
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| T |
6927273 |
atcaatg--aagaaatttggttgtagtattaaatttgt |
6927308 |
T |
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