View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6013_high_8 (Length: 375)
Name: NF6013_high_8
Description: NF6013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6013_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 357
Target Start/End: Original strand, 48403114 - 48403472
Alignment:
| Q |
3 |
accaaaatgattcataaaaaagaaatttgttcacatttttccatttttaaatttcattaatcagacgtgttcaatacaatttggtatttcaaccaatatc |
102 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
48403114 |
accagaatgattcataaaaaagaaatttgttcacatgtttccatttttaaatttcattaatcagacatgttcaatacaatttggtatttcacccaatatc |
48403213 |
T |
|
| Q |
103 |
tggaaattaactaataatgcggcttcctttgctaatgtatgagatgcctcgtttgcttatctccgcacaaactcaacactggaatttacataaaattgtg |
202 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48403214 |
tggaaattagctaataatgcggcttcctttgctaacgtatgagatgcctcgtttgcttatctccgcacaaactcaacactggaatttacataaaattgtg |
48403313 |
T |
|
| Q |
203 |
tgaagagagctctgcaattatcaattatgtcctcg-attcaatgacatcaaagttgggtgacgaaaattgaacc---actcgctttgaatcaagctcaaa |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48403314 |
tgaagagagctctgcaattatcaattatgtcctcgaattcaatgacatcaaagttgggtgacgaaaattgaaccactactcgctttgaatcaagctcaaa |
48403413 |
T |
|
| Q |
299 |
atcatcaagcctgagttgaaactcatggacccaatttaacgccgacaaaaggcctaaag |
357 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48403414 |
atcatcaagcctgagttgaagctcatggacccaatttaacgccgacaaaaggcctaaag |
48403472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 33906615 - 33906743
Alignment:
| Q |
69 |
gtgttcaatacaatttggtatttcaaccaatatctggaaattaactaataatgcggcttcctttgctaatgtatgagatgcctcgtttgcttatctccgc |
168 |
Q |
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| T |
33906615 |
gtgttcaatacaatatggtatttctaccactatttgggaactagctgataacaaggccgcttttgctaagttatgagcaacctcgtttgcttgtctccgc |
33906714 |
T |
|
| Q |
169 |
acaaactcaacactggaatttacataaaa |
197 |
Q |
| |
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|||||||| |||| || ||||||||||| |
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| T |
33906715 |
acaaactcgacacgtgagtttacataaaa |
33906743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 20426049 - 20426016
Alignment:
| Q |
149 |
cctcgtttgcttatctccgcacaaactcaacact |
182 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
20426049 |
cctcgtttgcttgtctccgcacaaactcaacact |
20426016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 355
Target Start/End: Original strand, 25537467 - 25537695
Alignment:
| Q |
131 |
ttgctaatgtatgagatgcctcgtttgcttatctccgcacaaactcaacactggaatttacataaaattgtgtgaagagagctctgcaattatcaattat |
230 |
Q |
| |
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||||||| ||||||| |||||| ||||||| ||||||||||||||||||||| || |||| ||||||||||||||| ||| |||| || ||||||||||| |
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| T |
25537467 |
ttgctaaagtatgagctgcctcatttgcttgtctccgcacaaactcaacactagagtttaaataaaattgtgtgaatagaactctacagttatcaattat |
25537566 |
T |
|
| Q |
231 |
gt-cctcgattcaatgacatcaaagttgggtgacgaaaattgaaccact---cgctttgaatcaagctcaaaatcatcaagcctgagttgaaactcatgg |
326 |
Q |
| |
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|| ||| ||||| | ||||| | |||||||||| ||||||| ||||| | |||||||||| || ||| ||| || | | || |||| ||||||| |
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| T |
25537567 |
gtccctgaattcactaacatctgatttgggtgacggaaattgatccactacatgttttgaatcaaacttaaagtcaacaggtcctagctgaagctcatgg |
25537666 |
T |
|
| Q |
327 |
acccaatttaacgccgacaaaaggcctaa |
355 |
Q |
| |
|
||||||||||| |||||||| || ||||| |
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|
| T |
25537667 |
acccaatttaatgccgacaacagtcctaa |
25537695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 20685587 - 20685461
Alignment:
| Q |
69 |
gtgttcaatacaatttggtatttcaaccaatatctggaaattaactaataatgcggcttcctttgctaatgtatgagatgcctcgtttgcttatctccgc |
168 |
Q |
| |
|
|||||||||||||| ||||||||| | ||| || |||||| || || | ||| || ||||| |||||| |||| | || ||| ||||||| ||||| | |
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| T |
20685587 |
gtgttcaatacaatctggtatttctatcaaaatttggaaactagctgaagatgtggtctccttagctaatctatgggctgtctcatttgcttgtctcctc |
20685488 |
T |
|
| Q |
169 |
acaaactcaacactggaatttacataa |
195 |
Q |
| |
|
|||||||||||||| || || |||||| |
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| T |
20685487 |
acaaactcaacactagagttgacataa |
20685461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 5827748 - 5827636
Alignment:
| Q |
70 |
tgttcaatacaatttggtatttcaaccaatatctggaaattaactaataatgcggcttcctttgctaatgtatgagatgcctcgtttgcttatctccgca |
169 |
Q |
| |
|
||||||||||||| || |||||| ||||| ||||||||| || || | | | ||| ||||| ||||||||||||| |||||| ||||||| ||||| | |
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| T |
5827748 |
tgttcaatacaatctgatatttctaccaaaatctggaaactagctgaagacgtggcctccttagctaatgtatgagctgcctcatttgcttgtctcctta |
5827649 |
T |
|
| Q |
170 |
caaactcaacact |
182 |
Q |
| |
|
||||||||||||| |
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| T |
5827648 |
caaactcaacact |
5827636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 3627509 - 3627478
Alignment:
| Q |
70 |
tgttcaatacaatttggtatttcaaccaatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
3627509 |
tgttcaatacaatttggtatttcaaccaatat |
3627478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 5954027 - 5954097
Alignment:
| Q |
162 |
tctccgcacaaactcaacactggaatttacataaaattgtgtgaagagagctctgcaattatcaattatgt |
232 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||||||| | | |||||||||||||||| |
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|
| T |
5954027 |
tctccgcacaaactcaacacgagaatttttataaaattgtcaaaagagagatttacaattatcaattatgt |
5954097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 53708132 - 53708236
Alignment:
| Q |
72 |
ttcaatacaatttggtatttcaaccaatatctggaaattaactaataatgcggcttcctttgctaatgtatgagatgcctcgtttgcttatctccgcaca |
171 |
Q |
| |
|
||||||||||| |||||| ||| |||| ||||||| ||||| |||||| || |||| ||||| | ||||| |||||| ||||||| |||||||||| |
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|
| T |
53708132 |
ttcaatacaatcaggtattacaaataataactggaaactaactgataatgtagccaccttagctaaagcatgagctgcctcatttgcttgtctccgcaca |
53708231 |
T |
|
| Q |
172 |
aactc |
176 |
Q |
| |
|
||||| |
|
|
| T |
53708232 |
aactc |
53708236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 47300392 - 47300341
Alignment:
| Q |
53 |
atttcattaatcaga-cgtgttcaatacaatttggtatttcaaccaatatct |
103 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
47300392 |
atttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaatct |
47300341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 15026531 - 15026457
Alignment:
| Q |
69 |
gtgttcaatacaatttggtatttcaaccaatatctggaaattaactaataatgcggcttcctttgctaatgtatg |
143 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||| || || | ||| ||||||||| |||||| |||| |
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|
| T |
15026531 |
gtgttcaatacaatctggtatttctaccaaaatctggaaactagctgaagatgtggcttccttagctaatctatg |
15026457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 593784 - 593736
Alignment:
| Q |
149 |
cctcgtttgcttatctccgcacaaactcaacactggaatttacataaaa |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| || ||||||||||| |
|
|
| T |
593784 |
cctcgtttgcttgtctccgcacaaactcgacacgtgagtttacataaaa |
593736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 5849245 - 5849177
Alignment:
| Q |
133 |
gctaatgtatgagatgcctcgtttgcttatctccgcacaaactcaacactggaatttacataaaattgt |
201 |
Q |
| |
|
|||||| |||||| |||||| |||| || ||||| ||||||||||||||| || || |||||| ||||| |
|
|
| T |
5849245 |
gctaatctatgagctgcctcatttgtttgtctcctcacaaactcaacactagagttgacataacattgt |
5849177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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