View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6013_low_6 (Length: 435)
Name: NF6013_low_6
Description: NF6013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6013_low_6 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr7 (9 HSPs) |
| |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] chr2 (8 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
| | |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 29047284 - 29046863
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||||||| ||||| || ||| |||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
29047284 |
atgaaggatgttagtagcataaatgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgatg |
29047188 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| || ||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||||||||||| |||||| | |
|
|
| T |
29047187 |
tagtctctttgattacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagattcatagtgagaaaaactagctattc |
29047088 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg-ggg |
310 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29047087 |
aatctccatcgtggttgcaaacaacaccaccaacatctaaacaaccaaaatcttctagaaagctaccatcaatattgagtttaagtgtaccttccggggg |
29046988 |
T |
|
| Q |
311 |
gatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccaca |
410 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29046987 |
gatcaaatgagctaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgcattcatcatgtaacaaaaaggtctttcacaccaca |
29046888 |
T |
|
| Q |
411 |
tcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
29046887 |
tcttgaatacgccaacgttgttcct |
29046863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 123 - 435
Target Start/End: Complemental strand, 2442386 - 2442071
Alignment:
| Q |
123 |
actacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcg |
222 |
Q |
| |
|
|||||||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||| ||||||| | |
|
|
| T |
2442386 |
actacaaaaatcaacacctatttggataacacgtaactcagctaataacgcatcacctccaacttcatagtgagaaaaactagctatccagtctccattg |
2442287 |
T |
|
| Q |
223 |
tggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatg |
319 |
Q |
| |
|
|||||| | | ||||||||||||| |||||||||| |||||| | ||| ||||||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
2442286 |
tggttgtggacaacaccaccaacacctaaacaacccaaatctctaaaaaaactaccatcaatattgagtttaagagtaccttccggagggggatctaatg |
2442187 |
T |
|
| Q |
320 |
agttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaata |
419 |
Q |
| |
|
|| |||||||| |||||| |||||||||||| ||| ||||| || |||| || ||| ||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
2442186 |
agctaagaggcatgatgaatgtgggtccaaatcaatattgggatagtaaaaaatgcattcatcatgtaacaaaaatgtctttcgcaccacatcttagata |
2442087 |
T |
|
| Q |
420 |
cgccaatgttgttcct |
435 |
Q |
| |
|
| ||||| ||| |||| |
|
|
| T |
2442086 |
caccaatattgatcct |
2442071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 10992962 - 10993104
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctt |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| ||||||| |||||||| ||||||| ||| ||||||| | |
|
|
| T |
10992962 |
atgtcagtagcataagtgtgcaaggtatgatcacgactatccataatcaggtcaactgctttcaaacaatcactctcacaaataatattgacataaccat |
10993061 |
T |
|
| Q |
119 |
ttttactacaaaaatcaagacctgtctggatagcacgtaactc |
161 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10993062 |
ttttactacaaaaatcaagacctatctagatagcacgtaactc |
10993104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 6862024 - 6861922
Alignment:
| Q |
56 |
cagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacg |
155 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| | ||||||||||| ||||||| ||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
6862024 |
cagcaataatcaggtcaactacttccaaacaactactcttacaaataatgttgacataaccatttttactacaaaaatcaagatctaactgaatagcacg |
6861925 |
T |
|
| Q |
156 |
taa |
158 |
Q |
| |
|
||| |
|
|
| T |
6861924 |
taa |
6861922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 2443343 - 2443242
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctt |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||| |||| |||| |
|
|
| T |
2443343 |
atgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgttcacatagcctt |
2443244 |
T |
|
| Q |
119 |
tt |
120 |
Q |
| |
|
|| |
|
|
| T |
2443243 |
tt |
2443242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 435
Target Start/End: Original strand, 5464660 - 5465074
Alignment:
| Q |
24 |
agtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| |
|
|
| T |
5464660 |
agtagcataagtgtgcaaggtatgatcaaaatcaacaataataaggtcaactgcttccaaacaaccactctaacaaataatgttgacataatctttttta |
5464759 |
T |
|
| Q |
124 |
ctacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgt |
223 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
5464760 |
ctacaaaaatcaagaactatctggatagtacgtaactcagctaataacacatcacctccaacttcatagtgagcaaaacctgctatccaatctccatcgt |
5464859 |
T |
|
| Q |
224 |
ggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatga |
320 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
5464860 |
ggttgcgaacaacaccaccaacacctaaacaaccaaaatcttctagaaagctaccatcactattgagtttgagtgtaccttccgaagggggatccaatga |
5464959 |
T |
|
| Q |
321 |
gttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatac |
420 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| ||||||| || |||| || ||| ||||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
5464960 |
gctaagaggtgtgatgagtgtgggtccaaaccgagattgggatagtaataaatgcattcatcatgtaataaaaagatctttcgcaccacatcttgaatac |
5465059 |
T |
|
| Q |
421 |
gccaatgttgttcct |
435 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
5465060 |
gccaatgttgatcct |
5465074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 435
Target Start/End: Original strand, 25828485 - 25828912
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| | |||||||| | ||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||| | ||||||||| || |
|
|
| T |
25828485 |
atgaaggatgtcaatagcataactctgcaaggtatgatcacgaccaacaacaatcaggtcaactgctttcaaacaatcactctcacatataatgttgaca |
25828584 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||| |||||| |||||||| ||| |||||||||||| ||||| |
|
|
| T |
25828585 |
tagccttttttactacaaaaatcaagacctatatggatagcacgtaattcagctaataacgcatcacttccaacttcatagcgagaaaaaccagttatcc |
25828684 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----g |
307 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| | ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25828685 |
aatctccatcatggttgcgaacaacaccaccaatacctaaacaaccaaagtcttctaaaaagctaccatcaatattgagtttaagtgtaccttccggagg |
25828784 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||| ||||| | ||||| || ||||||| | | ||||||||||||||||||||||||| |||| |
|
|
| T |
25828785 |
ggggatccaatgagctaagaggcgcgatgagtgtgggtacaaacaaggattgtcatagtaagaaatacattcatcatgtaacaaaaaggtctttcgcacc |
25828884 |
T |
|
| Q |
408 |
acatcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
|||||||| ||||| |||||||| |||| |
|
|
| T |
25828885 |
acatcttggatacgacaatgttgatcct |
25828912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 10329078 - 10329256
Alignment:
| Q |
30 |
ataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaa |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| |||| |||||||||||| || |
|
|
| T |
10329078 |
ataagtgtgcaaggtatgatcacgaccatcaataatcaggtcaactccttcctaacaatcactctcacaaaaaatgttgacatagccttttttactataa |
10329177 |
T |
|
| Q |
130 |
aaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagcta |
208 |
Q |
| |
|
|||| ||||||| | | |||||||||||||| | | |||| ||||||||||||| ||| |||||||| ||||| |||| |
|
|
| T |
10329178 |
aaattaagacctatttacatagcacgtaactccgttaataatacatcacctccaattttatagtgagagaaacctgcta |
10329256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 12501685 - 12501595
Alignment:
| Q |
337 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatg |
427 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| ||| ||||||| |||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12501685 |
agtgtgggtccaaaccaggattgggatagtaagaaatgcattcatcatttaacgaaaaagtctttcgcaccacatcttgaatacgccaatg |
12501595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 12527319 - 12527229
Alignment:
| Q |
337 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatg |
427 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| ||| ||||||| |||| |||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
12527319 |
agtgtgggtccaaaccaggattgggatagtaagaaatgcattcatcatttaacgaaaaattctttcgcaccacatgttgaatacgccaatg |
12527229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 27046254 - 27046332
Alignment:
| Q |
25 |
gtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataat |
104 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||| ||||||||| ||||||||||||||| | | |||||||| ||||||| |
|
|
| T |
27046254 |
gtagcataagtgtgtaaggtatgatcacg-ccaacaataatcaagtcaactgcttccaatcgatcactctcacaaataat |
27046332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 36817453 - 36817554
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| ||| ||||| || ||| |||| |||| ||| ||| |||||||| |||||| |||||| |
|
|
| T |
36817453 |
atgaagtatgttagtagcataagtgtgcaaggtatgatcgcgacaagcaacaaacagcccaaccgctttcaagcaatcactctcacaaataacattggca |
36817552 |
T |
|
| Q |
112 |
ta |
113 |
Q |
| |
|
|| |
|
|
| T |
36817553 |
ta |
36817554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 28717758 - 28717837
Alignment:
| Q |
172 |
acatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaa |
251 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||| || ||| ||| || |||| |||||||||||||||| |||| |
|
|
| T |
28717758 |
acatcacctccaattttgcagtgagaaaaatcagctacccaatcatcataatgtttgcaaataacaccaccaacacctaa |
28717837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5949657 - 5949703
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccag |
58 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
5949657 |
atgaaggatgttggtagtataagtgtgcaaggtatgatcatgaccag |
5949703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 39997589 - 39997881
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
39997589 |
atgatgaatgtaagtagcataagtttgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcataaataatgttggca |
39997688 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39997689 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtcactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
39997788 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtacctt |
304 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39997789 |
gatctgcatcgtggttgcgaacaacaccaccaacatctaaacaactaaaatcttgtagaaagctaccatcaatattgagtttaagtatacctt |
39997881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 24 - 435
Target Start/End: Complemental strand, 2887580 - 2887166
Alignment:
| Q |
24 |
agtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttta |
123 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| | |
|
|
| T |
2887580 |
agtagcataagtgtgcaag-tatgatcacgatcagcaataatcaggtcaactgcttccaaacaaccactctcgcaaataatgttgacatagtctttttca |
2887482 |
T |
|
| Q |
124 |
ctacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgt |
223 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||| ||||| ||||| ||||||||||| | | |||||||||||||||||||| | ||||| ||||| |
|
|
| T |
2887481 |
ctacaaaaatcaagacctatttggatatcacgtaacgcagctaataacgcatcacctccagcatcatagtgagaaaaaccagctattcaatctctatcgt |
2887382 |
T |
|
| Q |
224 |
ggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatg |
319 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||| |||| |
|
|
| T |
2887381 |
ggttgcgaacaacaccaccagcacctaaacaaccaaaatcttctaaaaagctaccatcaatattgagtttgagtaaaccttccgtaggggggatccaatg |
2887282 |
T |
|
| Q |
320 |
agttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaata |
419 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||| || |||| || ||| |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
2887281 |
agctaagaggcgccatgagtgtgggtccaaaccaagattgggatagtaaaaaatgcattcatcacgtaacaaaaaggtctttcgcaccacatcttgaata |
2887182 |
T |
|
| Q |
420 |
cgccaatgttgttcct |
435 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
2887181 |
cgccaatgttgatcct |
2887166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 16824192 - 16824610
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
|
|
| T |
16824192 |
atgaaggatgtcagtagcataagtgtgcaaagtatgatctcgaccagcaataatcaggtcaactgcttccaaacaac-actctcacaaataatgttgaca |
16824290 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| | || ||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
16824291 |
taaccttttttactataaaaatcaagacatatcaggataacacgtaactcagctaataacgcatcacctcccgcttcatagtgagaaaaatcagttatcc |
16824390 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cg |
307 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || || |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
16824391 |
aatctccattgtggttgcgaacaacaccatcagcacctaaacaaccaagatcttctagaaagctaccatcaatattgagtttcagtgtaccttctggagg |
16824490 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||| |||||| ||||||| | || ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
16824491 |
ggggatccaatgagctaagaggcacgatgagtgtggttccaaatcaagattaggatagtaagaaatgcattcatcatgtaacaaaaaggtctttcacacc |
16824590 |
T |
|
| Q |
408 |
acatcttgaatacgccaatg |
427 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
16824591 |
acatcttgaatacgtcaatg |
16824610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 11075885 - 11075502
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
11075885 |
atgaaggatgttagtagcataagtgtgcaaggtatgatcacgacaagcaataatcaagtcaactgcttccaaacaatcactctcacaaataatgttgaca |
11075786 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |||||||||| |||| |
|
|
| T |
11075785 |
tagcctttttaactacaaaaatcaagacctatctggatagcacgtaactcagctaataacgcatcacctccagcttcatagtgggaaaaaccagttatct |
11075686 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gg |
308 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| || |
|
|
| T |
11075685 |
aatctctatcgtggttgcgaacaacaccaccagcacctaaacaaccaaaatcttctagaaagctaccatcaatattgagtttgcgtgcactttccggagg |
11075586 |
T |
|
| Q |
309 |
gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaa |
394 |
Q |
| |
|
|||||| |||||| ||||||||| ||| ||||| || |||||||||||||| || ||||||| ||| |||||||||||| |||| |
|
|
| T |
11075585 |
gggatccaatgagctaagaggcgcgat--gtgtgtgttcaaaccaagattgggatagtaagaaatgcattcatcatgtaactaaaa |
11075502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 8266769 - 8266437
Alignment:
| Q |
30 |
ataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaa |
129 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||| || ||||||||||||||||||| || ||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
8266769 |
ataagtgtgcaaggtatgaccacgaccatcagtaagcatgtcaactgcttccaaacaatcattctcacaaataatgttggcatagccttttagactacaa |
8266670 |
T |
|
| Q |
130 |
aaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgc |
229 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |||| || |||||||||||| ||||||||||||| || |||| |||||| |||||||||| |
|
|
| T |
8266669 |
aaatcaagacctatctggatagtacgtaactcagctaataatgcaccacctccaacttcatagtgagaaaaactagttatcgaatctccgtcgtggttgc |
8266570 |
T |
|
| Q |
230 |
gaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatgagttaag |
326 |
Q |
| |
|
| | |||||||||| || ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||| |
|
|
| T |
8266569 |
gcacaacaccaccagcacctaaataaccaaaatcttctaaaaagctaccatcaatattgagtttaagtgtaccttccaaacgggaatccaataaactaaa |
8266470 |
T |
|
| Q |
327 |
aggcgtgatgagtgtgggtccaaaccaagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8266469 |
aggcgtgatgagtgtgggtccaaaccaagattg |
8266437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 9427761 - 9427547
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||| |||| ||||||||||||||||| ||||| || ||| || |||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
9427761 |
atgaaggatgtcagtagtataaatgtgcaaggtatgatcacgaccatcagtaagcatgtcaactgaatccaaacaatcactctcacaaataatgttggca |
9427662 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| | |||| ||||||||||||||||||| |||| |||||||| ||||||||| ||||| |||||||| |||||| |||||||||||| ||| ||| | |
|
|
| T |
9427661 |
tagcattttagactacaaaaatcaagacctatctgaatagcacggaactcagctaataacgcatcacct-caacttcatagtgagaaaaatcagttattc |
9427563 |
T |
|
| Q |
212 |
gatctccatcgtggtt |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9427562 |
aatctccatcgtggtt |
9427547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 18565893 - 18565694
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| | |||||||||||||||| |||| |||| ||||| ||||||||||||||||| ||| ||||||| |||||||| ||||||||||| | |
|
|
| T |
18565893 |
atgaagtatgtcaatagcataagtgtgcaatgtataatcacgaccatcaataatcaggtcaactactttcaaacaatcactctcacaaataatgttgaga |
18565794 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||| ||||||||| |
|
|
| T |
18565793 |
tagtcttttggactacaaaaatcgagactaatctggatagcacgtaactcagctaataacacatcacctccagcttcatagtgaaaaaaatcagctatcc |
18565694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 3620969 - 3621307
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||| ||||||| || |||||||||||| ||||| ||| || || |||| |||||||| |||||||||||| ||||||||||| | |
|
|
| T |
3620969 |
atgaaggatgtcagtaacataagtatgtaaggtatgatcacgaccaacaacaaacatctcaaacgcttccaagcaaccactctcacaaataatgttgtta |
3621068 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||| || | ||||||||||||| | |||| |||||||| |||||||| |||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
3621069 |
tagcctttgttgcgacaaaaatcaagatccatctgaatagcacgcaactcagc--caaacacatcaccttcaactttaaagcaagaaaaaccagctatcc |
3621166 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----g |
307 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||| | || || ||||| |||| | ||| |||||||||| || ||||||||| ||||||| | |
|
|
| T |
3621167 |
aatctccatcgtggttgggaacaccaccaccaacaccaaagcacccaaagccttctaaaaaactaccatcaacatcgagtttaagataaccttccaaagg |
3621266 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtcca |
348 |
Q |
| |
|
| || || ||||||||||||| |||||||||||||| |||| |
|
|
| T |
3621267 |
gaggctccaatgagttaagagacgtgatgagtgtggatcca |
3621307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 26479557 - 26479372
Alignment:
| Q |
61 |
ataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaact |
160 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||| ||||||| ||| |||| | ||| || | |||||||||||||| | | | |||||||| | || |
|
|
| T |
26479557 |
ataatcagctcaactgattccaaacaatcactctcacaaataatattgtcatagcatttcttgcaacaaaaatcaagacatatataaatagcacgcagct |
26479458 |
T |
|
| Q |
161 |
cagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaaca |
246 |
Q |
| |
|
||||| ||| | ||||||||||||||| ||||| ||||||||||||||| |||||||| |||||| ||| ||||||||||||| |
|
|
| T |
26479457 |
cagctaatagcgcatcacctccaacttcatagtgcgaaaaaccagctatcaaatctccataatggttgtgaacaacaccaccaaca |
26479372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 435
Target Start/End: Complemental strand, 7384282 - 7384127
Alignment:
| Q |
283 |
atattgagtttaagtgtaccttccgg----gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccct |
378 |
Q |
| |
|
||||||||||| |||||||||| || |||||| |||||| |||||| || ||||||||||||||||||| | ||||| || |||||| ||| | |
|
|
| T |
7384282 |
atattgagttttagtgtaccttgtggaggagggatccaatgagctaagagacgcgatgagtgtgggtccaaac-atgattgagataataagaaatgcatt |
7384184 |
T |
|
| Q |
379 |
catcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
7384183 |
catcatataacaaaaaagtctttcgcaccacatcttgaatacgcaaatgttgatcct |
7384127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 435
Target Start/End: Original strand, 47924360 - 47924787
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
47924360 |
atgaaggatgtcagtagcataagtgtgcaaggtatgatcatgatcatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgact |
47924459 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
47924460 |
taaccttttttactacaaaaatcaagacctatccggatagcacgtaattcagctaataatgcatcacctccaacttcatagtgtgaaaaaccagcaatcc |
47924559 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cg |
307 |
Q |
| |
|
|||||||| || | | |||| |||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
47924560 |
aatctccattgtcgctacgaacaacaccgccaacacctaaacaaccaaaatcttctagaaagctgccatcaatattgagtttaagtgtaccttctagagg |
47924659 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
||||||| |||||| ||| || | |||||||||||||||||||||||||||| || ||||||| ||| ||||||| ||||||||| ||||||| ||| |
|
|
| T |
47924660 |
ggggatccaatgagctaaaagacacgatgagtgtgggtccaaaccaagattgggatagtaagaaatgcattcatcatctaacaaaaaagtctttcgcact |
47924759 |
T |
|
| Q |
408 |
acatcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
||||| ||||||||||||||||| |||| |
|
|
| T |
47924760 |
acatcctgaatacgccaatgttgatcct |
47924787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 41940635 - 41941048
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||| || |
|
|
| T |
41940635 |
atgaaggatgtcggtagcataagtgtgcaaggtatgatcacgaccgtcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgttgaca |
41940734 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| |||||| | ||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41940735 |
tagccttttaaattacaaaaatcaagacctattctgatagcacgtaactcagctaataacgcatcacctccagcttcatagtgagaaaaaccagctatcc |
41940834 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----g |
307 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||||||| ||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
41940835 |
aatctccatcgtggttgcg---aacaccaccaccagctatcc------aatcttctagaaagctatcatcaatattgattttaagtgtaccttccggatg |
41940925 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
| ||||| |||||| |||||| |||| ||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||| |||||| |||| |
|
|
| T |
41940926 |
gaggatccaatgagctaagagatgtgacgagtgtgggtccaaaccaagattgggatagtaagaaatgcattcatcatgtaacaaaaagatctttcgcacc |
41941025 |
T |
|
| Q |
408 |
acatcttgaatacgccaatgttg |
430 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
41941026 |
acatcttgaatacaccaatgttg |
41941048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 435
Target Start/End: Complemental strand, 54259397 - 54258983
Alignment:
| Q |
24 |
agtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttta |
123 |
Q |
| |
|
|||| |||||||||| | | ||| |||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||| |||| |||| |
|
|
| T |
54259397 |
agtaacataagtgtgtaggttatcatcacaaccagcaataaacaggtcaactgcttccaaacaatcactctcacaaataatgttgacatagccttattta |
54259298 |
T |
|
| Q |
124 |
ctacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgt |
223 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||| | | |||||||||||||||||||||| |||||| || |
|
|
| T |
54259297 |
ctgtaaaaatcaagacctatctggatagcacgtaactcagctaacaacccatcacctccagc-tcatagtgagaaaaaccagctatccattctccaatgt |
54259199 |
T |
|
| Q |
224 |
ggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatg |
319 |
Q |
| |
|
||||||||| || ||||||| || ||||||||||| | ||||| |||||||||||||||||||||| || |||||||||||| ||||| || |||| |
|
|
| T |
54259198 |
ggttgcgaacaataccaccatcacctaaacaaccagagtcttctggaaagctaccatcaatattgagcttgagtgtaccttccggaggggggctccaatg |
54259099 |
T |
|
| Q |
320 |
agttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaata |
419 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||||||| || ||| ||| ||| |||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
54259098 |
agttaagaggcgcgatgagagtgggtccgaaccaagattgggatagtacgaaatgcattcatcatgtaacaaaaagatctttcgcaccacatcttgaata |
54258999 |
T |
|
| Q |
420 |
cgccaatgttgttcct |
435 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
54258998 |
caccaatgttgatcct |
54258983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 40656241 - 40656565
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatg-ttggcataacct |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||| | |||| | |
|
|
| T |
40656241 |
atgttagtagtataagtgtgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgtttgacgtaacat |
40656340 |
T |
|
| Q |
118 |
tttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctc |
217 |
Q |
| |
|
||| |||||||||||||||||| | | |||||| ||||| |||||||| ||||| |||||| || ||||| |||| |||||||||| ||| | ||||| |
|
|
| T |
40656341 |
tttctactacaaaaatcaagacatatatggataacacgttactcagctaataacgcatcacttctaacttcacagtg-gaaaaaccagttattcaatctc |
40656439 |
T |
|
| Q |
218 |
catcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg--ggggatca |
315 |
Q |
| |
|
|| ||||||||||| |||||||| | || ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
40656440 |
tattgtggttgcgaacaacaccacgagcacctaaacaaccaaaatcttctagaaagttaccatcaatattgagtttgagtgtaccttccgaaagggatcc |
40656539 |
T |
|
| Q |
316 |
aatgagttaagaggcgtgatgagtgt |
341 |
Q |
| |
|
||||| ||||||| | ||||||||| |
|
|
| T |
40656540 |
aatgaactaagaggtgcgatgagtgt |
40656565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 98 - 420
Target Start/End: Complemental strand, 25969457 - 25969134
Alignment:
| Q |
98 |
aaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgaga |
197 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||| || ||| ||||| | || | ||| |||||||| |
|
|
| T |
25969457 |
aaataatgttgacataacctcttttactacaaaaatcaagacctatctggatagtacgtaactcaactaatagcacatggcttcgagcttcatagtgaga |
25969358 |
T |
|
| Q |
198 |
aaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagt |
297 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||| ||||||| || || ||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |
|
|
| T |
25969357 |
aaaaccaactatccaatctccatcgtgattgcgaacaacaccatcaccacctaaacaaccaaaatcttctagaaagctaccattaatatcgagtttgagt |
25969258 |
T |
|
| Q |
298 |
gtaccttccgg----gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaa |
393 |
Q |
| |
|
|| |||||||| | |||| |||||| ||||||||| |||||||| ||| ||||||||| || || |||| || || |||||||||| |||| |
|
|
| T |
25969257 |
gt-ccttccggaggagagatccaatgagctaagaggcgcaatgagtgt--gtctaaaccaagactgagatagtaaaaaatgtatacatcatgtaataaaa |
25969161 |
T |
|
| Q |
394 |
aggtctttcacaccacatcttgaatac |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25969160 |
tggtctttcacaccacatcttgaatac |
25969134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 35 - 300
Target Start/End: Complemental strand, 50945970 - 50945699
Alignment:
| Q |
35 |
tgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacc---ttttttactacaaaa |
131 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||| | |||||||||| |||| ||| ||||||||||| |||| | ||||||||||||||| |
|
|
| T |
50945970 |
tgtgcaacatatgatcacgaccaacaataatcaggtcaatcggttccaaacaatcactttcacaaataatgttgacatagtccttttttttactacaaaa |
50945871 |
T |
|
| Q |
132 |
atcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcga |
231 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| ||||| |||||||| || ||| |||||||||||| ||||||||| ||||||||| |||||| || |
|
|
| T |
50945870 |
atcaagacctatctggatagcgcgtaactcagctaataacgcatcaccttcagcttcatagtgagaaaaatcagctatccaatctccatcatggttgtga |
50945771 |
T |
|
| Q |
232 |
ataacaccaccaacatctaaacaaccaaaatcttccagaaagctac---catcaatattgagtttaagtgta |
300 |
Q |
| |
|
| ||||||||||||| ||||||||||||| | ||| | |||||||| |||||||||||||||| |||||| |
|
|
| T |
50945770 |
acaacaccaccaacacctaaacaaccaaactattctaaaaagctaccatcatcaatattgagtttgagtgta |
50945699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 27184867 - 27184968
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctt |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||| |||| |||| |
|
|
| T |
27184867 |
atgtcagtagcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgttcacatagcctt |
27184966 |
T |
|
| Q |
119 |
tt |
120 |
Q |
| |
|
|| |
|
|
| T |
27184967 |
tt |
27184968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 24016050 - 24015774
Alignment:
| Q |
29 |
cataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactaca |
128 |
Q |
| |
|
|||||||||| |||||||||||| || ||||| || | ||||||||||||||| || |||||||| ||||||||||| |||| || | |||| ||| |
|
|
| T |
24016050 |
cataagtgtgtaaggtatgatcacaacaagcaacaaagatttcaactgcttccaaagaatcactctcacaaataatgttgttataa-ctctattacaaca |
24015952 |
T |
|
| Q |
129 |
aaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttg |
228 |
Q |
| |
|
||||||||||| | | ||| |||| |||||| | | || ||||||||||||||| || |||||| | ||||| | |||||||||||||||| |
|
|
| T |
24015951 |
aaaatcaagacacatttcaataacacgcaactcaaccaacaatgcatcacctccaacttcatatgaagaaaagtcggctattcaatctccatcgtggttg |
24015852 |
T |
|
| Q |
229 |
cgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc |
306 |
Q |
| |
|
|||| ||| ||||||||| |||| || || || |||| | ||| ||||||||| ||||| || ||| ||||||||| |
|
|
| T |
24015851 |
cgaacaaccccaccaacacctaagcacccgaagccttctataaaattaccatcaacattgaattcaagagtaccttcc |
24015774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 1758704 - 1759116
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
1758704 |
atgaaggatgttagtggcataagtgtgcaaggtatgatcacaactagcaataatcaggtcaattgcttccaaacaatcactctcacaaataatgttgaca |
1758803 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
||||||||| ||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1758804 |
caacctttttcactacaaaattcaagaccta----------aagtaactcagctaataacgcatcacctccaacttcatagtgagaaaaaccagctatcc |
1758893 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cg |
307 |
Q |
| |
|
|||||||||||||||||||| || |||| || || |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
1758894 |
aatctccatcgtggttgcgaacaataccatcagcacctaaacaaccaaaaccttctagaaagctaccatcaatattgagtttgagtgtaccttcgagaag |
1758993 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1758994 |
ggggatccaatgagttaagaggcgtgatgagtatgggtccaaaccaagattggaatagtaagaaatgcattcatcatgtagcaaaaaggtctttcacacc |
1759093 |
T |
|
| Q |
408 |
acatcttgaatacgccaatgttg |
430 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
1759094 |
acatcttgaatacaccaatgttg |
1759116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 12563318 - 12562893
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| | |
|
|
| T |
12563318 |
atgaaggatgtcggtagcataagtgttcaaagtatgatcacgaccaacaataatcaggtcaactacttccaaacaatcactctcacaaataatgttgata |
12563219 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||| | || | ||||| ||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
12563218 |
tggccttttttactacaaaaatcaagacctatctggatagcacgtaaattagataataacgcatcacctccagcttcatagtgag-aaaaccagctatcc |
12563120 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc---cgg |
308 |
Q |
| |
|
||||||||||||||||| || | ||| |||| || ||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
12563119 |
aatctccatcgtggttgcaaacagcactaccatcacctaaacaacaaaaatcttctagaaatctaccatcaatattgagtttgagtgtaccttcgggagg |
12563020 |
T |
|
| Q |
309 |
gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacca |
408 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||| |||||||| || |||||| ||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
12563019 |
gggatacaatgagctaagaggcgtgatgagtgtgggtccaaacgaagattgggataataagaaatgcattcatcatgtaacaaaaagatctttcatacca |
12562920 |
T |
|
| Q |
409 |
catcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
||| |||||||| ||||||||| |||| |
|
|
| T |
12562919 |
catattgaatacaccaatgttgatcct |
12562893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 15243518 - 15243097
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||| | ||||||||||| || |
|
|
| T |
15243518 |
atgaaggatgtgagtagcataagtgtgcaaggtatgatcatgaccatcaataatcaggtcaactacttcaaaacaatcactcttacaaataatgttgaca |
15243419 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
||||||||| |||||||||||| ||||| | || ||||||||||||||| ||| ||||| |||||||| |||||| ||||| |||||||||| ||||| |
|
|
| T |
15243418 |
taaccttttctactacaaaaattaagacatatcaagatagcacgtaactcggctaataacgcatcaccttcaacttcatagtgcgaaaaaccagttatcc |
15243319 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc---cgg |
308 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| ||||||||||||||| || | |||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
15243318 |
aatctccatcgtggttgagaacaacacctccaacacctaaacaaccaaaattttttaaaaagctgccatcaatattgagtttgagtgtaccttctggagg |
15243219 |
T |
|
| Q |
309 |
gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacca |
408 |
Q |
| |
|
|||||| |||||| | ||||| | ||||||||||||||||||||| |||||| || |||||| ||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
15243218 |
gggatccaatgagctgagaggtgcgatgagtgtgggtccaaaccaggattgggatagtaagagatgcattcatcatgtaacaaaaaagtctttcggacca |
15243119 |
T |
|
| Q |
409 |
catcttgaatacgccaatgttg |
430 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
15243118 |
catcttgaatacgtcaatgttg |
15243097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 82 - 418
Target Start/End: Complemental strand, 23589908 - 23589568
Alignment:
| Q |
82 |
aaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctc |
181 |
Q |
| |
|
|||||| |||||| | ||||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23589908 |
aaacaatcactctgacaaataatgttgacataacctttgttactacaaaaataaagttctatctggatagcacgtaactcagctaataacgcatcacctc |
23589809 |
T |
|
| Q |
182 |
caactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatc |
281 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||| ||||| ||||| ||| |||| |||||||||| || ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23589808 |
caacttcatagtgggaaaactcagttatccaatctctatcgtagttacgaacaacaccaccagcacctaaacaaccaaaatcttctagaaagctgccatc |
23589709 |
T |
|
| Q |
282 |
aatattgagtttaagtgtaccttc----cgggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccc |
377 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||| |||||| || ||||||| ||| |
|
|
| T |
23589708 |
aatattgagtttgagtgtaccttctgaaggggggatccaatgagttaaggggcgcgatgagtgtgggtccaaaccaggattgggatggtaagaaatgcat |
23589609 |
T |
|
| Q |
378 |
tcatcatgtaacaaaaaggtctttcacaccacatcttgaat |
418 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
23589608 |
tcatcatgtaacaaaaaagtctttcgcaccacatattgaat |
23589568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 28932313 - 28932545
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
28932313 |
atgaaggatgtcagtagtataagtgtgcaaggtatgatcacggccagcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgaca |
28932412 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|||| ||||| |||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| || || ||| ||||||||||||||| |||||| |
|
|
| T |
28932413 |
taacatttttcactacaaaaaccaagacctatcttgatagcacgtaactcagctaataacgcatcagcttcagcttcatagtgagaaaaaccaactatcc |
28932512 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaa |
244 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| |
|
|
| T |
28932513 |
aatctccatcgtggttacgaacaacaacaccaa |
28932545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 12607975 - 12607758
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||||| | ||||| ||||||||||||| ||||||||||||||| ||||| || |||||||||| || |
|
|
| T |
12607975 |
atgaaggatgtcagtagcataagtgtgcaagatatgattacgaccatcaataatcaggtctactgcttccaaacaatcactcaca--aataatgttgaca |
12607878 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||| |||||||||||||| | | ||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
12607877 |
taac-ttttttactacaaaaatcaagacatatctgcatagcacgtaactcggttaataacacatcatttccaacttcataatgagaaaaaccagctatcc |
12607779 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaa |
232 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
12607778 |
aatctccatcgtggttacgaa |
12607758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 261
Target Start/End: Complemental strand, 23810513 - 23810334
Alignment:
| Q |
82 |
aaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctc |
181 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || |||||| |
|
|
| T |
23810513 |
aaacaatcactctcacaaataatgttgacataacctttgttactacaaaaatcaagacctttctggatagcacgtaactcagctaacaacgcaccacctc |
23810414 |
T |
|
| Q |
182 |
caactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaa |
261 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||| ||||| ||||| ||| |||| |||||||||| || |||||||||||||| |
|
|
| T |
23810413 |
caacttcatagtgggaaaactcagttatccaatctctatcgtagttacgaacaacaccaccagcacctaaacaaccaaaa |
23810334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 45260865 - 45261087
Alignment:
| Q |
25 |
gtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttac |
124 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||| ||||||||| | || || |||||| ||| ||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
45260865 |
gtagcataagtgtgcaatgtatgttcacgaccatgaataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatgacctttttttt |
45260964 |
T |
|
| Q |
125 |
t-acaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgt |
223 |
Q |
| |
|
| ||||||||||||||| ||| ||||||| | || |||||| ||||| ||||||||||||||| |||||||||||| ||| ||||| |||| |||||| |
|
|
| T |
45260965 |
ttacaaaaatcaagacccatctagatagcatgcaaatcagctaataacgcatcacctccaacttcatagtgagaaaaatcagttatccaatcttcatcgt |
45261064 |
T |
|
| Q |
224 |
ggttgcgaataacaccaccaaca |
246 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
45261065 |
ggttgcgaacaacaccaccaaca |
45261087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 36128140 - 36128055
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataat |
104 |
Q |
| |
|
|||| |||| ||||||| || ||| |||||||| ||||| ||||||||| ||||||||||| || ||| ||| |||||||||||| |
|
|
| T |
36128140 |
atgtcagtaacataagtatgtaagttatgatcacgaccaacaataatcaagtcaactgctttgaagcaagcacactcataaataat |
36128055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 4653713 - 4653292
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctt |
118 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||| |
|
|
| T |
4653713 |
atgttagtagcataagtgtgtaaggtatgatcacgaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttaacatagcctt |
4653614 |
T |
|
| Q |
119 |
tt-ttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctc |
217 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||||||| ||| | |||||||||| ||||||||| ||||| |
|
|
| T |
4653613 |
ttattactacaaaaatcaagacctatctggatagcacgtaactcacctagtaacgcatcacctccagcttcatggtgagaaaaatcagctatccaatctc |
4653514 |
T |
|
| Q |
218 |
catcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggat |
313 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||| || |||||||||||||||||||||| |||||||| | | ||||||| |
|
|
| T |
4653513 |
catcgtggttgcgaacaacaccaccagcacctaaacaaccaaaatcttctaggtagctaccatcaatattgagtttgagtgtacccttcggaggggggat |
4653414 |
T |
|
| Q |
314 |
caaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatct |
413 |
Q |
| |
|
| |||||| |||||| | ||||||||||||||||||||| |||||| || ||||||| ||| |||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
4653413 |
ccaatgagctaagagatgcgatgagtgtgggtccaaaccatgattgggatagtaagaaatgcattcattatgtaacaaaaatgtctttcgcaccacatct |
4653314 |
T |
|
| Q |
414 |
tgaatacgccaatgttgttcct |
435 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
4653313 |
tgaatacgccaatgttgatcct |
4653292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 6571117 - 6571499
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||| || |
|
|
| T |
6571117 |
atgaaggatgtcagtagcataagtgtgtaagttatgatcacgaccagcaataatcaggtcaactgtttccgaacaatcaccctcacaaataatgttgaca |
6571216 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| |||||| ||||| |||||||||||||| | |||||||||| |||||||||| | ||| ||||||||||| ||| |||||||||||| |||| | || |
|
|
| T |
6571217 |
tagccttttctactataaaaatcaagacctatttggatagcacataactcagctaacaacgcatcacctccagcttcatagtgagaaaaatcagccaccc |
6571316 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg--gg |
309 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||||| |||||| ||||| ||||||||||||||||||||||| || ||||||||||||| || |
|
|
| T |
6571317 |
aatctccatcgtggttgcgaacaacaccaccatctcctaaactaccaaagtcttctagaaagctaccatcaatattgagcttgagtgtaccttccggagg |
6571416 |
T |
|
| Q |
310 |
ggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaa |
392 |
Q |
| |
|
|| || |||||| ||||||||| || ||||||||||| |||||||||||| || ||| ||| ||| || |||||||||||| |
|
|
| T |
6571417 |
ggctcgaatgagctaagaggcgcgacgagtgtgggtctgaaccaagattgggatagtatgaaatgcattcgtcatgtaacaaa |
6571499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 8271224 - 8271506
Alignment:
| Q |
24 |
agtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttta |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
8271224 |
agtaacataagtgtgcaaggtatgatcacaaccagcagtaatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataaccttttctt |
8271323 |
T |
|
| Q |
124 |
ctacaaaa-atcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcg |
222 |
Q |
| |
|
|||||||| |||||||||| | |||||| | |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
8271324 |
ctacaaaaaatcaagacctatttggataacgcgtaactcagctaataacgcatcacctccaacttcataatgagaaaaaccagctatccaatctccatcg |
8271423 |
T |
|
| Q |
223 |
tggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc |
305 |
Q |
| |
|
|||||||||| |||||||||| || |||| ||||||||| |||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
8271424 |
tggttgcgaacaacaccaccagcacctaagcaaccaaaaccttctagaaagctatcatcaatattgagtttgaatgtaccttc |
8271506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 44440461 - 44440056
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
44440461 |
atgaaggatgttagtagcataagtgtgcaaggtatgatcacgaccatcaataattgagtcatctgcttccaaacaatcactctcacaaataatgttgaca |
44440362 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||| | |||| ||| ||| |||||| ||| ||||| ||||| | |||||| ||||||||||||||||||| | |
|
|
| T |
44440361 |
tagccttttttactacaaaaatcaagacatatctgaataacacataactctgctaataacgtatcacatacaacttcatagtgagaaaaaccagctacct |
44440262 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gg |
308 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| || |||||||| |||||||||| ||||||||||||||||||| |||||| ||| |||||| | || |
|
|
| T |
44440261 |
aatctccatcgtggttgcgaacaacgccaccatcacctaaacaatcaaaatcttctagaaagctaccatcaatatcgagtttgagtctacctttcggagg |
44440162 |
T |
|
| Q |
309 |
gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacca |
408 |
Q |
| |
|
|| ||| |||||| ||||| || ||| ||||| | |||||||||| |||| || |||| || | | ||||||| || ||||| ||||||| ||||| |
|
|
| T |
44440161 |
ggtatccaatgagcaaagagacgcgataagtgttgatccaaaccaatattgagatagtaaaaaatacattcatcataaaataaaaatgtctttcgcacca |
44440062 |
T |
|
| Q |
409 |
catctt |
414 |
Q |
| |
|
|||||| |
|
|
| T |
44440061 |
catctt |
44440056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 37193045 - 37192749
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||| ||||| |||||||||||| ||||| |||||||||| |||| ||| ||||||||||| || |
|
|
| T |
37193045 |
atgaaggatgtaagtagcataaatgtgcaagatatgatcacgaccatcaataatcaggttaactgtttccaaacaatcactttcaaaaataatgttgaca |
37192946 |
T |
|
| Q |
112 |
taa-ccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatc |
210 |
Q |
| |
|
|| |||||| |||||||||||||| || | |||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||| || |||| |
|
|
| T |
37192945 |
caaaccttttagactacaaaaatcaaaacttatctggatatcacgtaactcagttaataacgtatcacctccaatttcatagtgagaaaaattagttatc |
37192846 |
T |
|
| Q |
211 |
cgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg |
307 |
Q |
| |
|
| ||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||| |||| |||||| |
|
|
| T |
37192845 |
caatcaccatcgtggttgcgaacaacaccaccaacacctaaacaactcaaatcttccagaaaactaccatcaacattgaatttaaatgtatcttccg |
37192749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 45036141 - 45036292
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
45036141 |
atgaaggatgtcagtagcataagtgtgcaaggtatgatcatcaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgaca |
45036240 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcag |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45036241 |
taaccttttttactacaaaaatcaagacctacctggatagcacgtaactcag |
45036292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 222 - 435
Target Start/End: Original strand, 5964399 - 5964615
Alignment:
| Q |
222 |
gtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaat |
318 |
Q |
| |
|
|||| |||||| |||||||||||||||||| || ||| ||||||| ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||| |
|
|
| T |
5964399 |
gtggatgcgaacaacaccaccaacatctaagcagccacaatcttctagaaagctaccattaatattgtgtttgagtgtaccttccagagggggatccaat |
5964498 |
T |
|
| Q |
319 |
gagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaat |
418 |
Q |
| |
|
||| ||||| | ||||||||| |||||| ||||||||| | || ||||||| ||| ||||| |||||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
5964499 |
gagctaagaaatgcgatgagtgttggtccagaccaagatttggatagtaagaaatgcattcatcttgtaacaaaaagatcttttgcactacaccttgaat |
5964598 |
T |
|
| Q |
419 |
acgccaatgttgttcct |
435 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
5964599 |
acgtcaatgttgatcct |
5964615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 45041843 - 45041949
Alignment:
| Q |
15 |
aagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataa |
114 |
Q |
| |
|
|||||||| | || |||||||||||||| ||||||||| |||| ||||||| | |||||||||| |||||| |||||||| | ||| | || ||||| |
|
|
| T |
45041843 |
aagaatgtcaataacataagtgtgcaagatatgatcattaccatcaataattaaatcaactgcttttaaacaatcactctcacaggtaacgatgacataa |
45041942 |
T |
|
| Q |
115 |
ccttttt |
121 |
Q |
| |
|
||||||| |
|
|
| T |
45041943 |
ccttttt |
45041949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 12 - 435
Target Start/End: Original strand, 53590140 - 53590567
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| || ||||||| |||| |||||| |||||||| ||||||||||| || |
|
|
| T |
53590140 |
atgaagaatgtcaatagcataaatgtgcaaggtatgatcacgaccaataataaccatgtcaactccttcgaaacaatcactctcacaaataatgttgaca |
53590239 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
| |||||||||| |||||||||| | | ||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53590240 |
aagtcttttttactgcaaaaatcaaagcttatctttttatcacataactcagctgataacacatcacctccaactttatagtgagaaaaaccagctatca |
53590339 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----g |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||| | | |
|
|
| T |
53590340 |
aatctccatcgtggttgcgaacaacaccaccacaacctaagcaaccaaaatcttgtagaaaactaccatcaatattgagtttgagtgtacctttcggagg |
53590439 |
T |
|
| Q |
308 |
ggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacacc |
407 |
Q |
| |
|
||||||| ||||||||||||| | ||||||| || |||||||| |||||| || ||||||| ||| ||||||||||||||||| |||||| |||| |
|
|
| T |
53590440 |
ggggatctaatgagttaagagacacgatgagtatgagtccaaactaagattcagatagtaagaaatgcattcatcatgtaacaaaaatgtcttttacaca |
53590539 |
T |
|
| Q |
408 |
acatcttgaatacgccaatgttgttcct |
435 |
Q |
| |
|
||||||||||||| || |||||| |||| |
|
|
| T |
53590540 |
acatcttgaatacaccgatgttggtcct |
53590567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 43445491 - 43445074
Alignment:
| Q |
26 |
tagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcata--acctttttta |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||| |
|
|
| T |
43445491 |
tagcataagtgtgcaaggtatgatcacgaccgacaataataaggtcaactgcttccaaacaattactctcacaaataatgttgacatagtttttttttta |
43445392 |
T |
|
| Q |
124 |
ctacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgt |
223 |
Q |
| |
|
||| |||||||||||| | | ||||||| ||||||||||| | ||||| ||||||||||||||| |||||| ||||| ||| ||||| || |||||||| |
|
|
| T |
43445391 |
ctataaaaatcaagacatatatggatagtacgtaactcagataataacgcatcacctccaacttcatagtgataaaaaacagatatccaatttccatcgt |
43445292 |
T |
|
| Q |
224 |
ggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc-----gggggatcaaat |
318 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||||| ||| |
|
|
| T |
43445291 |
ggttgcgaactacaccaccaacacctaaacaaccaaaatcttctagaaacttaccatcaatattgagtttgagtgtacctttcggatggggggattcaat |
43445192 |
T |
|
| Q |
319 |
gagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaac-aaaaaggtctttcacaccacatcttgaa |
417 |
Q |
| |
|
||| ||| || ||||||||||||||||||||||||| ||||| || ||||||| ||| |||| | |||| ||||||||||||| ||| |||||||||| |
|
|
| T |
43445191 |
gagctaaaagacgtgatgagtgtgggtccaaaccaaaattgggatagtaagaaatgcattcattgtttaacaaaaaaggtctttcgcacaacatcttgaa |
43445092 |
T |
|
| Q |
418 |
tacgccaatgttgttcct |
435 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
43445091 |
tataccaatgttgatcct |
43445074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 263
Target Start/End: Original strand, 7320277 - 7320512
Alignment:
| Q |
26 |
tagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca-taaccttttttac |
124 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||| ||||||||| ||| | | ||||||||||| |||||||| |||||||||| || | |||||| || |
|
|
| T |
7320277 |
tagcataagtgtgcaatgtatgatcacg-ccaacaataatcaagtctagttcttccaaacaatcactctcactaataatgttgacaatgtcctttt--ac |
7320373 |
T |
|
| Q |
125 |
tacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
7320374 |
tacaaaaatcaagacctgtctggatagcacgtaattcagctaataacgcatcacctccagcttcatagtgagaaaaaccagttatccagtctccatcgtg |
7320473 |
T |
|
| Q |
225 |
gttgcgaataacaccaccaacatctaaacaaccaaaatc |
263 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
7320474 |
gttgcgaacaacaccaccaacacctaaacaaccaaaatc |
7320512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 17508753 - 17508619
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| |||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| | || |
|
|
| T |
17508753 |
atgaaggatgtcagtagcataagtatgcaacgtatgatcacgaccatcaataatcaagtcaactgcttccaaacaagcactctcacaaataatgtagaca |
17508654 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctg |
146 |
Q |
| |
|
| | |||| ||||||||||||||||||| |||| |
|
|
| T |
17508653 |
tgattttttaaactacaaaaatcaagacctatctg |
17508619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 50426010 - 50425848
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| ||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |||||| | |||||| |||| | |
|
|
| T |
50426010 |
atgaaggatgtcagtgacataagtgtacaaggtatgatcacgatcagcaataatcaggtcaactgcttccaaacaatcactcttacaaataacgttgacg |
50425911 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacaca |
174 |
Q |
| |
|
|| ||||| |||||| |||| | ||||| ||||| | |||| |||||||| || |||||||| |
|
|
| T |
50425910 |
tagcctttgttactataaaatttaagacatgtctatacagcatgtaactcaactaataacaca |
50425848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 7321235 - 7321160
Alignment:
| Q |
341 |
tgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttga |
416 |
Q |
| |
|
||||||||||||||||||| || |||| || ||| ||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
7321235 |
tgggtccaaaccaagattgagatagtaaaaaatgcattcatcatgtgacaaaaaggtctttcgcatcacatcttga |
7321160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33460237 - 33460292
Alignment:
| Q |
19 |
atgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaac |
74 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| || || ||| |||||||||||| |
|
|
| T |
33460237 |
atgttagtagtataagtgtgcaaggtatgatcacgatcaacaacaatcaggtcaac |
33460292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 54849 - 55148
Alignment:
| Q |
12 |
atgaagaatgtaagtagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca |
111 |
Q |
| |
|
|||||| |||| || | ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| || |
|
|
| T |
54849 |
atgaaggatgtcagcaacataaatgtgcaaggtatgatcacgaccatcaataatcaggtcacctacttccaaacaatcactctcacaaataatgttcaca |
54948 |
T |
|
| Q |
112 |
taaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc |
211 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
54949 |
tagcctttcagactacaaaaatcaagacctatctgaataacacgtaactcagctaataacaaatcacctccagcttcatagtgagaaaaaccagctatcc |
55048 |
T |
|
| Q |
212 |
gatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccggggg |
311 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
55049 |
aatctccatcgtgattgcaaacaacaccaccaacacctaaacaacccaaatcttctagaaaactaccatcaatattgagtttaagtgtatcttccagggg |
55148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 12292041 - 12292454
Alignment:
| Q |
26 |
tagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacc-ttttttac |
124 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||| |||||||||| |||||||||||||| ||| |||||||| |||||||||| |||| || |||||| |
|
|
| T |
12292041 |
tagcataagtgtgcaatgcatgatcacggccaacaataatcagctcaactgcttccaagcaatcactctcacaaataatgttatcatagcctttttttga |
12292140 |
T |
|
| Q |
125 |
tacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtg |
224 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||| ||||||| | |||||||||||||||||| || | |||||||||| || |||| ||||||||| | |
|
|
| T |
12292141 |
aacaaaaatcaagccctatctggatagtacgcaactcagttaataacacatcacctccaaattcatggtgagaaaaatcaaatatctaatctccatc-tt |
12292239 |
T |
|
| Q |
225 |
gttgcgaataacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtacctt----ccgggggatcaaatga |
320 |
Q |
| |
|
||||| || |||| |||| || |||| || |||| ||||| ||||||||| ||| |||||||||||| ||| || ||| |||||||| ||| | |
|
|
| T |
12292240 |
gttgcaaacaacatcaccggcacctaagcactcaaagtcttctagaaagctatcattaatattgagtttgagtttatcttttggaggggggatccaataa |
12292339 |
T |
|
| Q |
321 |
gttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatac |
420 |
Q |
| |
|
| |||||| || | ||||||||| |||| | || ||| | || | |||| ||| ||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
12292340 |
gctaagagacgcggtgagtgtggatccagtcgaaaattaggatattgagaaatgcattcatcatgtaacaaaaatctctttcgcaccacatcttgaatac |
12292439 |
T |
|
| Q |
421 |
gccaatgttgttcct |
435 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
12292440 |
gccaatgttgatcct |
12292454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 12291892 - 12291988
Alignment:
| Q |
26 |
tagcataagtgtgcaaggtatgatcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttt |
122 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||| | |||||||| |||||||||||||| ||| |||||||| ||||||||||| |||| |||||||| |
|
|
| T |
12291892 |
tagcataagtgtgcaatgcatgatcacggccaacgataatcagctcaactgcttccaagcaatcactctcacaaataatgttgtcatagcctttttt |
12291988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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