View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6013_low_9 (Length: 277)
Name: NF6013_low_9
Description: NF6013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6013_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 40094259 - 40094009
Alignment:
| Q |
1 |
cctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094259 |
cctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatc |
40094160 |
T |
|
| Q |
101 |
agatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgttt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40094159 |
agatacatgggcacacacacttcctatctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccattt |
40094060 |
T |
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| Q |
201 |
ggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40094059 |
ggtttcaaaaacgactgtggcacgtggtatctgtgagatgagattaatgtc |
40094009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40063627 - 40063369
Alignment:
| Q |
1 |
cctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063627 |
cctgattatgattaggacagttgagcaacagtgcaggccctacttttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgagaatc |
40063528 |
T |
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| Q |
101 |
agatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgttt |
200 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
40063527 |
agatacatgggcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgccgttt |
40063428 |
T |
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| Q |
201 |
ggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagtcac |
259 |
Q |
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| T |
40063427 |
ggtttcaaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagtcac |
40063369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 40081977 - 40081722
Alignment:
| Q |
1 |
cctgattatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatc |
100 |
Q |
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|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081977 |
cctgattatgattaggacaactgagcaacagagcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatc |
40081878 |
T |
|
| Q |
101 |
agatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgttt |
200 |
Q |
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||||||||| | |||||||||| | |||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
40081877 |
agatacatgtgaacacacactttccagctgttttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgttt |
40081778 |
T |
|
| Q |
201 |
ggtttcaaaaacgactgtggcacgtggtatctgtgagatgggattaatgtcgcagt |
256 |
Q |
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|||||||||||||| |||| || ||||||||| ||||| ||||| |||| |||| |
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| T |
40081777 |
ggtttcaaaaacgatcgtggtacatggtatctgcaagatgcgattattgtctcagt |
40081722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 22012288 - 22012391
Alignment:
| Q |
90 |
gggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagag |
189 |
Q |
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|||||||| |||| |||||| | |||||||||| ||| |||||||||| |||||||||||| ||| || || || || ||||||||||||||||||| || |
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| T |
22012288 |
gggtgagattcagttacatgtgaacacacactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaag |
22012387 |
T |
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| Q |
190 |
tgtt |
193 |
Q |
| |
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|||| |
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|
| T |
22012388 |
tgtt |
22012391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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