View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_10 (Length: 412)
Name: NF6014_high_10
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 49634550 - 49634946
Alignment:
| Q |
1 |
caatgtgcaggcctctcaatagaaaatttaagaaatcatgtgggaggacagatgaaaaaatcatgcttttataccgaaagtaatagaaagggaaatatta |
100 |
Q |
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| T |
49634550 |
caatgtgcaggcctctcaatagaaaatttaagaaatcatgtgggaggacagatgaaaaaatcatgcttttataccgaaattattagaaagggaaatatta |
49634649 |
T |
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| Q |
101 |
taacattttaaatttcaagttaacaaggatagtgataaaaattataaataccgcttccatggccgataaataagggcaacgatgttgcacgccttatacc |
200 |
Q |
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| T |
49634650 |
taacattttaaatttcaagttaacaaggatagtgataaaaattataaataccgcttccatggccgataaataagggcaacgatgttgcacgccttatacc |
49634749 |
T |
|
| Q |
201 |
atcacgtgatcctccgatctggtttcttaaggtcctgtatcaattagcaccttctgagttatgtatatagcttacagaaaaggaaattatgggtggatgt |
300 |
Q |
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| T |
49634750 |
atcacgtgatcctccgatctggtttcttaaggtcctgtatcaattagcaccttctgagttatgtatatagcttacagaaaaggaaattatgggtggatat |
49634849 |
T |
|
| Q |
301 |
gccttattgttcttgacaaatggtagaaaccaaaccttgaacaaggaagccagccacttaatgaaacaattgcgcttaagttaatagggtaaatgtt |
397 |
Q |
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| T |
49634850 |
gccttattgttcttgacaaatggtagaaaccaaaccttgaacaaggaagccagccacttaatgaaacaattgcgcttaagttaatagggtaaatgtt |
49634946 |
T |
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