View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_11 (Length: 407)
Name: NF6014_high_11
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 55573718 - 55573339
Alignment:
| Q |
10 |
aagaatataaaccaaaaaagagtattatgacaagaagtggacacaggaattaattaattaattaaacctttctgagataaaaatagttaattaattacct |
109 |
Q |
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| T |
55573718 |
aagaaaataaaccaaaaaagagtattatgacaagaagtggacacaggaattaattaattaa----acctttctgagataaaaatagttaattaattacct |
55573623 |
T |
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| Q |
110 |
gcactatgttaggatgaaagagacgtgagagtaaagcaacttcagacttgaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcct |
209 |
Q |
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| T |
55573622 |
gcactatgttaggatgaaagagacgtgagagtaaagcaacttcagacttgaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcct |
55573523 |
T |
|
| Q |
210 |
caccattttaacagcaacagctctctgcttgtaaattccacggtaaattcgactgtgagcaccggacgcaaacttgttacctatgaaaagttgagaaaga |
309 |
Q |
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| T |
55573522 |
caccattttaacagcaacagctctctgcttgtaaattccacggtaaattcgactgtgagcaccggacgcaaacttgttacctatgaaaagttgagaaaga |
55573423 |
T |
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| Q |
310 |
tcagcagtccattcttcctgatcttcctttgaagcttcccacgtttcgacattctcagagtccaatatcatggaccatgattct |
393 |
Q |
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| T |
55573422 |
tcagcagtccattcttcctgatcttcctttgaagcttcccacgtttcgacattctcagagtccaatatcatggaccatgattct |
55573339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 159 - 393
Target Start/End: Complemental strand, 1360092 - 1359858
Alignment:
| Q |
159 |
gaattgctgttctagcaatgttcttctctcctcattctgagtaggaatcctcaccattttaacagcaacagctctctgcttgtaaattccacggtaaatt |
258 |
Q |
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| T |
1360092 |
gaattgttgttctagcaatgttcttctctcctcattctgagttggaatcctcaccattttaacagcaacagctctctgcttgtaaattccacggtaaatc |
1359993 |
T |
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| Q |
259 |
cgactgtgagcaccggacgcaaacttgttacctatgaaaagttgagaaagatcagcagtccattcttcctgatcttcctttgaagcttcccacgtttcga |
358 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
1359992 |
cgactgtgagcaccggacgcaaacttgttaccgatgaaaagctgagaaagatcagcagtccattcttcctgaccctcctttgaagcttcccacatttcga |
1359893 |
T |
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| Q |
359 |
cattctcagagtccaatatcatggaccatgattct |
393 |
Q |
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| T |
1359892 |
cattctcaaaatccaatatcatggaccatgattct |
1359858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 33035819 - 33035731
Alignment:
| Q |
16 |
ataaaccaaaaaagagtattatgacaagaagtggacacaggaattaattaattaattaaacctttctgagataaaaatagttaattaatt |
105 |
Q |
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| T |
33035819 |
ataaaacaaaaaagactattaggacaagaagtggacacaagaattcattaattaattaaacctttctgagat-aaaatagttaattaatt |
33035731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 33035733 - 33035700
Alignment:
| Q |
360 |
attctcagagtccaatatcatggaccatgattct |
393 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
33035733 |
attctcagagtccaatatcatggaccataattct |
33035700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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