View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6014_high_13 (Length: 397)

Name: NF6014_high_13
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6014_high_13
NF6014_high_13
[»] chr1 (8 HSPs)
chr1 (4-385)||(48584416-48584797)
chr1 (115-385)||(48618883-48619150)
chr1 (113-284)||(48628108-48628279)
chr1 (114-385)||(11546415-11546683)
chr1 (124-371)||(48655786-48656030)
chr1 (110-371)||(48660756-48661008)
chr1 (112-371)||(48666350-48666600)
chr1 (121-385)||(48652311-48652572)
[»] chr3 (1 HSPs)
chr3 (115-385)||(19666239-19666506)
[»] chr8 (1 HSPs)
chr8 (116-385)||(27227341-27227607)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 48584416 - 48584797
Alignment:
Q  4 aatataaactgcatgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaatta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584416 aatataaactgcatgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaatta 48584515  T
Q  104 atgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48584516 atgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtt 48584615  T
Q  204 tgcattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584616 tgcattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaa 48584715  T
Q  304 ccactacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584716 ccactacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 48584797  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 115 - 385
Target Start/End: Complemental strand, 48619150 - 48618883
Alignment:
Q  115 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 214  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||  ||||||||| ||    
T  48619150 ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct 48619051  T
Q  215 tcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacccat 314  Q
    |||||| |||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||   |||||| ||  |  ||||  |||||     
T  48619050 tcaactcctctgctttttcccctgttgtagcttccaataaacactttttcacctcatctcttgttactaat---ttattttcaatcataccataacccaa 48618954  T
Q  315 tttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
    | |||| ||||| ||||||||||| |||||||| ||||||||||| | ||| ||||| | || ||||||||    
T  48618953 tctaatccctacaccaaaaacatctaccaagaactttgcatttgtgacttgatcaccccatgctggaaatg 48618883  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 48628108 - 48628279
Alignment:
Q  113 gtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttg 212  Q
    |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||||  |||||||||     
T  48628108 gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt 48628207  T
Q  213 cttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaa 284  Q
    |||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  48628208 cttcaactcctctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctcttgttaccaa 48628279  T

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Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 114 - 385
Target Start/End: Original strand, 11546415 - 11546683
Alignment:
Q  114 tttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgc 213  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  |||||||| ||||| |||||||||||| ||||||||| |    
T  11546415 tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc 11546514  T
Q  214 ttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactaccca 313  Q
    ||||| | ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||   |||||| ||  |  ||||  |||||    
T  11546515 ttcaaatcctcagctttttcccctattgttgcttctaataagcactttttcacctcatctcttgttacaaat---ttattttcaatcataccataaccca 11546611  T
Q  314 ttttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
     | |||| ||||| ||||||||||| ||||| || ||||||||||| | ||| ||||| | || ||||||||    
T  11546612 atctaatccctacaccaaaaacatctaccaaaaactttgcatttgtgacttgatcaccccatgctggaaatg 11546683  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 124 - 371
Target Start/End: Original strand, 48655786 - 48656030
Alignment:
Q  124 tcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaacttct 223  Q
    ||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||  ||||||||| |||||||| ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  224 ctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacccattttaattcc 323  Q
    |||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||    | ||| |||| | || |  ||||| | |||| ||    
T  48655886 ctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat---ctgttttcagctccactataacccaatctaatccc 48655982  T
Q  324 taccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacc 371  Q
    ||| ||||||||||| |||||||| |||||||||||| ||||||||||    
T  48655983 tacaccaaaaacatctaccaagaactttgcatttgtaggttggtcacc 48656030  T

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Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 371
Target Start/End: Original strand, 48660756 - 48661008
Alignment:
Q  110 catgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatt 209  Q
    ||||||||||||||||||  |||||  |||||||||  || || ||||| ||||| || ||||  || ||||| ||   | ||||||||||  |||||||    
T  48660756 catgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcattgcatt 48660855  T
Q  210 ttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccacta 309  Q
    ||| |||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||| ||| ||||          ||||  |    
T  48660856 ttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctcttgttaccagtttcttat---------caccataa 48660946  T
Q  310 cccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacc 371  Q
    |||| | |||| ||  ||||||||||||| |||||||| ||||| |||||||||||||||||    
T  48660947 cccaatctaatcccagccccaaaaacatcgaccaagaactttgcgtttgtaagttggtcacc 48661008  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 371
Target Start/End: Original strand, 48666350 - 48666600
Alignment:
Q  112 tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatttt 211  Q
    |||||||||||||||||||||||  |||||||||  || || ||||| |||||||| ||||  ||||||||||||  ||| ||| ||||  |||||||||    
T  48666350 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 48666449  T
Q  212 gcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacc 311  Q
     ||||||| ||||||||||||| ||| ||||  |||||||||| || ||||| |  ||||||||| |||||| |||  | |          ||||| | |    
T  48666450 tcttcaacgtctctgctttttcccctgttgtaacttccaataagcatttctttaaatcatctcttcttaccagtttcctttc---------accacgagc 48666540  T
Q  312 cattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacc 371  Q
    || | |||| || |||||| |||||||||||||||| ||||| |||||||||||||||||    
T  48666541 caatctaatcccaaccccataaacatcaaccaagaactttgcgtttgtaagttggtcacc 48666600  T

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Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 121 - 385
Target Start/End: Original strand, 48652311 - 48652572
Alignment:
Q  121 atgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaact 220  Q
    ||||||| ||||||  ||||||||| | ||||||| |||||||| | ||| |  || ||||||||    |||||||||||  ||||||||| ||||||||    
T  48652311 atgtcttgcataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaact 48652410  T
Q  221 tctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacccattttaat 320  Q
     |||||||||||| ||     |||||||||| || ||||||||||||||||||||||| ||||||   |||||| ||||   || |  |||||   ||||    
T  48652411 cctctgctttttccccagccattgcttccaacaagcacttcttcacctcatctcttgtcaccaat---ttattttcagcatgactataacccaacctaat 48652507  T
Q  321 tcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
     ||||| ||||||||||| |||||||||||||||||||| | ||| ||||| | || ||||||||    
T  48652508 ccctactccaaaaacatctaccaagaattttgcatttgtgacttgatcaccccatgctggaaatg 48652572  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 115 - 385
Target Start/End: Complemental strand, 19666506 - 19666239
Alignment:
Q  115 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    ||||  ||||||||||||   |||||||||||  ||||||||||||    
T  19666506 ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct 19666407  T
Q  215 tcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacccat 314  Q
    |||||| |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||   ||||   || |  |||||     
T  19666406 tcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctcttgttaccaatttattat---cagcatgactataacccaa 19666310  T
Q  315 tttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
    | |||| || || ||||||||||||||||| || ||||||||||| | ||| ||||| | || ||||||||    
T  19666309 tctaataccaactccaaaaacatcaaccaaaaactttgcatttgtgacttgatcaccccatgctggaaatg 19666239  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 27227341 - 27227607
Alignment:
Q  116 tcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgctt 215  Q
    |||||||||||||||||||  |||||| || |||||||||||| ||||| || || |  ||  |||||||   ||||||||||||  |||  ||||||||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  216 caacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccactacccatt 315  Q
    |||| |||||||||||   |||    ||||||||||||| || |||||||||||||||||   ||||||| |||| |   | |||  || |  ||||| |    
T  27227441 caacatctctgcttttggccctgccattgcttccaataagcatttcttcacctcatctctacataccaatctatttt---ccgcctgactataacccaat 27227537  T
Q  316 ttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatg 385  Q
     | |  |||||| |||||||||| |||||||| ||||||||||||| ||| ||||| | || ||||||||    
T  27227538 ctgacccctacctcaaaaacatctaccaagaactttgcatttgtaacttgatcaccccatgctggaaatg 27227607  T

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