View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_22 (Length: 283)
Name: NF6014_high_22
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 39026219 - 39026471
Alignment:
| Q |
18 |
caaagaaagcatatagtgcatgcaaacaattcacatgggagcataacatgatcttcacaagaagtcctcacttttccctctctttcacagctcatacccc |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39026219 |
caaagaaagcaaatagtgcatgcaaacaattcacatggaagcataacatgatcttcacaggaagtcctcacttttccctctctttcacagctcatacccc |
39026318 |
T |
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| Q |
118 |
aaatcccacgagtcctcacaattctagttttaactatatcccttaaactactgtacctatacttagctttttaatgataaaatgattaatgtaacacgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39026319 |
aaatcccacgagtcctcacaattctagttttaactatatcccttaaactactgtacctatacttagctttttaatgataaaatgattaatgtaacacgtc |
39026418 |
T |
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| Q |
218 |
acacaccatgcataacctcttataaatataataatatctcatgcacatggtct |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39026419 |
acacaccatgcataacctcttataaatataataatatcttatgcacatggtct |
39026471 |
T |
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