View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_25 (Length: 265)
Name: NF6014_high_25
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 6235414 - 6235585
Alignment:
| Q |
82 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcact |
181 |
Q |
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| T |
6235414 |
tgattatgctttaaatataaatgtactcaatcataaaacatactcattttcatataaatttctttttgatatcaacggtta-aaaaaaattatgttcact |
6235512 |
T |
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| Q |
182 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgat |
254 |
Q |
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| T |
6235513 |
ggctaggatttacaccaatttgagttgcatatcaaattattaatagttaggtagcagaatagcacatgatgat |
6235585 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 2973296 - 2973215
Alignment:
| Q |
82 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttag |
163 |
Q |
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| T |
2973296 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcattttcatataaatttctttttgatatcaacagttag |
2973215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 2975539 - 2975469
Alignment:
| Q |
82 |
tgattatgctttaaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaaca |
158 |
Q |
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| T |
2975539 |
tgattatgctttaaatataaatgtcctcaatcataaaacatactcatttcc------atttctttttgatatcaaca |
2975469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 6026670 - 6026830
Alignment:
| Q |
94 |
aaatataaatgtactcaatcataaaacatacacatttccatataaatttctttttgatatcaacagttagnnnnnnnttatgttcactggctaggattta |
193 |
Q |
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||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||| |||||||| |||| |||| ||||| | ||||||| | |
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| T |
6026670 |
aaatatatatgtactcaat---aaagcgtactcatttccatataaatttctttttattatcaacaattagatatttgttattttcacatg-taggattca |
6026765 |
T |
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| Q |
194 |
caccaatttgagttgcatatcaaattattaa----tagttaggtagcagaatagcacatgatgat |
254 |
Q |
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||||| ||||| |||| ||||| |||||||| ||||||||||| ||||||||||||| |||| |
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| T |
6026766 |
caccagtttgaattgcctatcagattattaatagttagttaggtagtagaatagcacatggtgat |
6026830 |
T |
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