View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6014_high_27 (Length: 247)

Name: NF6014_high_27
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6014_high_27
NF6014_high_27
[»] chr3 (11 HSPs)
chr3 (7-247)||(2759549-2759789)
chr3 (29-247)||(2807602-2807820)
chr3 (19-247)||(2818892-2819120)
chr3 (19-247)||(2855385-2855613)
chr3 (19-247)||(2790655-2790883)
chr3 (19-243)||(2838175-2838399)
chr3 (19-247)||(5413221-5413449)
chr3 (21-247)||(2769404-2769630)
chr3 (26-247)||(2797696-2797917)
chr3 (19-247)||(2749330-2749558)
chr3 (31-117)||(3201409-3201495)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-247)||(5727-5955)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 2759789 - 2759549
Alignment:
Q  7 tggacaacgctgaccaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactaga 106  Q
    ||||||||||   ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  2759789 tggacaacgccctccaagatcatatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactaga 2759690  T
Q  107 aatgatttcttgaaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcgg 206  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||    
T  2759689 aatgatttcttgaaaaaatctgcaacttgcataattctagtggtgattatgatcctactacctttgttgttattaggcatggcaaattcaacctggtcgg 2759590  T
Q  207 aaaaatcttcttcccatacatcatcaaagaatatcaaatac 247  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  2759589 aaaaatcttcttgccatacatcatcaaagaatatcaaatac 2759549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 2807820 - 2807602
Alignment:
Q  29 aatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaaaaaatctg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  2807820 aatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaaggatttcttgaaaaaatctg 2807721  T
Q  129 cagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcccatacatc 228  Q
    || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | |||||||||||| ||||||||||||| |||||||||    
T  2807720 caacttgcatcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatc 2807621  T
Q  229 atcaaagaatatcaaatac 247  Q
    |||||||||||||||||||    
T  2807620 atcaaagaatatcaaatac 2807602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2819120 - 2818892
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  2819120 accaagctcagacctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttg 2819021  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| ||||||||||||| || |||||||||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||||||||||    
T  2819020 aaaaaatctgcaacttgcatcattcttgtggtgattatgatcctactacctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttctt 2818921  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||| ||||||    
T  2818920 gccatacatcatcaaagaatattaaatac 2818892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2855385 - 2855613
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||| |||||||||    
T  2855385 accaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttg 2855484  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||    
T  2855485 aaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttctt 2855584  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||| |||||||||||||||| |||||||    
T  2855585 gccaaacatcatcaaagaataccaaatac 2855613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2790883 - 2790655
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||| |||||||||    
T  2790883 accaagctcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggtgtcaaaagttgcaagttgtgaacatgaactagaaaagatttcttg 2790784  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| |||||||||||||||| |||||||||||||| | |||||| ||||| || || ||||| | ||||| ||||||||||||||||||||    
T  2790783 aaaaaatctgcaacttgcatcattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttctt 2790684  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     |||||||||||| |||||||||||||||    
T  2790683 gccatacatcatcgaagaatatcaaatac 2790655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 2838175 - 2838399
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||| |||||||||    
T  2838175 accaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttg 2838274  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  2838275 aaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttctt 2838374  T
Q  219 cccatacatcatcaaagaatatcaa 243  Q
     ||| ||||||||||||||||||||    
T  2838375 gccaaacatcatcaaagaatatcaa 2838399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 5413449 - 5413221
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||||||||||| ||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||    
T  5413449 accaagttcaaatccaaacaccttcttgcagtaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatatactagaaaggattttttg 5413350  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||| ||| |||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || | |||||||||||| || ||||||| ||    
T  5413349 aaaaaatccgcaacttgcatcattctagtggtgattatgatcctactacctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgtt 5413250  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||||||||||    
T  5413249 gccatacatcatcaaagaatatcaaatac 5413221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 2769630 - 2769404
Alignment:
Q  21 caagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaa 120  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||  ||||||| |||||||| |||||||||||    
T  2769630 caagttcaaatctgaatgctttcttgcagaagagttcccatgctttgttaggaggcaaaagttgcatgttaagaacatgaactagaaaggatttcttgaa 2769531  T
Q  121 aaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcc 220  Q
    |||||||||| | ||||||||||| || || ||||||||||| |||| ||| ||||| || |||||||  | |||||||||||||||||||||||||| |    
T  2769530 aaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgc 2769431  T
Q  221 catacatcatcaaagaatatcaaatac 247  Q
    |||||||||||||||||||||||||||    
T  2769430 catacatcatcaaagaatatcaaatac 2769404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 2797917 - 2797696
Alignment:
Q  26 tcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaaaaaat 125  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||| |||| ||||||||||||||||    
T  2797917 tcaaatctgaatgctttcttgcagaagagttcccatgatttgtttggtgtcaaaagttgcaagttgtgaacatgaacttgaaaggatttcttgaaaaaat 2797818  T
Q  126 ctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcccatac 225  Q
    ||||| ||||||||||||| || ||||| ||||||||  |  |||| ||||| ||||||||||| | |||||||||||| ||||| ||||||| ||||||    
T  2797817 ctgcaacttgcatcattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatac 2797718  T
Q  226 atcatcaaagaatatcaaatac 247  Q
    ||||||||||||||||||||||    
T  2797717 atcatcaaagaatatcaaatac 2797696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2749558 - 2749330
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||| |||    
T  2749558 accaagctcatatctaaatactctcttgcagaaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggattttttg 2749459  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| | | |||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| | || ||||||||| | |||||||||||    
T  2749458 aaaaaatctgcaacatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttctt 2749359  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     |||||| |||||||||||||||||||||    
T  2749358 gccatacgtcatcaaagaatatcaaatac 2749330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 3201495 - 3201409
Alignment:
Q  31 tctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttctt 117  Q
    ||||||| | || ||||| || |||||||| |||||||||||||||||| |||| |||| ||||| ||| || ||||| ||||||||    
T  3201495 tctaaatgccttgttgcaaaacagttcccacgctttgtttggaggcaaaggttgtaggtggtgaatatgaacaagaaaagatttctt 3201409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 5727 - 5955
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||| ||| |||||||||    
T  5727 accaggttcaaatctaaatacttttttgcagaagagttcccatactttgtttggaggcaagagttgcagtttgtgaacatgaactataaaggatttcttg 5826  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| || ||| |  |||||||||| || |||||||| ||||| |||||||| ||||| ||||||||||| | |||||||||||| |||||||||||||    
T  5827 aaaaattcggcaacaagcatcattcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttctt 5926  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||||||||||    
T  5927 gccatacatcatcaaagaatatcaaatac 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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