View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6014_high_28 (Length: 233)

Name: NF6014_high_28
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6014_high_28
NF6014_high_28
[»] chr4 (5 HSPs)
chr4 (13-214)||(18842693-18842894)
chr4 (65-214)||(18854211-18854360)
chr4 (65-210)||(50015564-50015710)
chr4 (13-57)||(18853711-18853755)
chr4 (15-54)||(50015017-50015056)
[»] chr8 (2 HSPs)
chr8 (65-210)||(44112621-44112767)
chr8 (15-54)||(44112089-44112128)
[»] chr1 (2 HSPs)
chr1 (65-210)||(51301588-51301737)
chr1 (15-54)||(51301055-51301094)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 18842693 - 18842894
Alignment:
Q  13 agaaaatagataaaacattcatattgcttttcatcttagcaaaaaggtaaagatctaaatacctggattcttgatggaactaaatattcccgggcacctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18842693 agaaaatagataaaacattcatattgcttttcatcttagcaaaaaggtaaagatctaaatacctggattcttgatggaactaaatattcccgggcacctt 18842792  T
Q  113 ctggtgtggatcttgacagtatcggagtttcaacctaccttacgaacaaaaaggtaaagatcgacacagcataccaaataccaacaaccaaagtacgacg 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18842793 ctggtgtggatcttgacagtatcggagtttcaacctaccttatgaacaaaaaggtaaagatcgacacagcataccaaataccaacaaccaaagtacgacg 18842892  T
Q  213 tg 214  Q
    ||    
T  18842893 tg 18842894  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 18854211 - 18854360
Alignment:
Q  65 atctaaatacctggattcttgatggaactaaatattcccgggcaccttctggtgtggatcttgacagtatcggagtttcaacctaccttacgaacaaaaa 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18854211 atctaaatacctggattcttgatggaactaaaaattcccgggcaccttttagtgtggatcttgacagtatcggagtttcaatctaccttacgaacaaaaa 18854310  T
Q  165 ggtaaagatcgacacagcataccaaataccaacaaccaaagtacgacgtg 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18854311 ggtaaagatcgacacagcataccaaataccaacaactaaagtacgacgtg 18854360  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 50015564 - 50015710
Alignment:
Q  65 atctaaatacctggattcttgatggaactaaatattcccgggcaccttctggtgtggatcttgacagtatcggagtttcaacctaccttacgaac-aaaa 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||    
T  50015564 atctaaatacctggattcttgatggaactaaataatcccgggcaccttctggtgtggatcttgacagtattggagtttcaatctaccttatgaacaaaaa 50015663  T
Q  164 aggtaaagatcgacacagcataccaaataccaacaaccaaagtacga 210  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  50015664 aggtaaagatcaacacaggataccaaataccaacaaccgaagtacga 50015710  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18853711 - 18853755
Alignment:
Q  13 agaaaatagataaaacattcatattgcttttcatcttagcaaaaa 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18853711 agaaaatagataaaacattcatattgcttttcatcttagcaaaaa 18853755  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 50015017 - 50015056
Alignment:
Q  15 aaaatagataaaacattcatattgcttttcatcttagcaa 54  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  50015017 aaaatagataaaacattcatattgcttttcagcttagcaa 50015056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 44112621 - 44112767
Alignment:
Q  65 atctaaatacctggattcttgatggaactaaatattcccgggcaccttctggtgtggatcttgacagtatcggagtttcaacctaccttacgaac-aaaa 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||    
T  44112621 atctaaatacctggattcttgatggaactaaataatcccgggcaccttctggtgtggatcttgacagtattggagtttcaatctaccttatgaacaaaaa 44112720  T
Q  164 aggtaaagatcgacacagcataccaaataccaacaaccaaagtacga 210  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  44112721 aggtaaagatcaacacaggataccaaataccaacaaccgaagtacga 44112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 44112089 - 44112128
Alignment:
Q  15 aaaatagataaaacattcatattgcttttcatcttagcaa 54  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  44112089 aaaatagataaaacattcatattgcttttcagcttagcaa 44112128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 51301588 - 51301737
Alignment:
Q  65 atctaaatacctggattcttgatggaactaaatattcccgggcaccttctggtgtggatcttgacagtatcggagtttcaacctaccttacgaac-aaaa 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || | ||||    
T  51301588 atctaaatacctggattcttgatggaactaaataatcccgggcaccttctggtgtggatcttgacaatattggagtttcaatctaccttatgatcaaaaa 51301687  T
Q  164 aggtaaagatcgacacag---cataccaaataccaacaaccaaagtacga 210  Q
    ||||||||||| ||||||    |||| | |||||||||||||||||||||    
T  51301688 aggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacga 51301737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 51301055 - 51301094
Alignment:
Q  15 aaaatagataaaacattcatattgcttttcatcttagcaa 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51301055 aaaatagataaaacattcatattgcttttcatcttagcaa 51301094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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