View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_3 (Length: 555)
Name: NF6014_high_3
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 2389244 - 2389741
Alignment:
| Q |
1 |
taccctcacttcgctgtcaataatcggaaaaatttaaggttaagttaaaaacttatatgcgaattcaaagttttgcaactttataaaatttaaaaataaa |
100 |
Q |
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| T |
2389244 |
taccctcacttcgctgtcaataatcggaaaaatttaaggttaagttaaaaacttatatgcgaattcaaagttttgcaactttataaaatttaaaaataaa |
2389343 |
T |
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| Q |
101 |
caaaaggacttgtgaaaagaaattaatatttcagaacagattgattccttgataaaataatcgatcttgatcttatcttgaaagtgttggaatagcatac |
200 |
Q |
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| T |
2389344 |
caaaaggactcgtgaaaagaaattaatatttcagaacagattgattccttgataaaataattgatcttgatcttatcttgaaagtgttggaatagcatac |
2389443 |
T |
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| Q |
201 |
agacctgatatcagatatggagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagatatcatattcagacgg |
300 |
Q |
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| T |
2389444 |
agacctgatatcggatatcgagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagatatcatattcagacgg |
2389543 |
T |
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| Q |
301 |
ccatctgctgccaaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgttatccaacaatctcaattctcaagatac |
400 |
Q |
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| T |
2389544 |
ccatctgctgccaaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgtcatccaacaatctcaattctcaagatac |
2389643 |
T |
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| Q |
401 |
atgaaatatacatgttactgtataggaactggggtatctagctacatgcttctgcaatttctactctcttggatgcgattcatcaattgtcctttaat |
498 |
Q |
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| T |
2389644 |
atgaaatatacatgttactgtataggaactggggtatctagctacatgcttctggaatttctactctcttggatgcgattcatcaattgtcctttaat |
2389741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 548
Target Start/End: Original strand, 2389759 - 2389789
Alignment:
| Q |
518 |
gcctctcaatttatctcggttattcttctca |
548 |
Q |
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| T |
2389759 |
gcctctcaatttatctcggttattcttctca |
2389789 |
T |
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