View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_high_8 (Length: 457)
Name: NF6014_high_8
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 29588103 - 29588524
Alignment:
| Q |
18 |
atcaggatacaagtttccagctctatacagtatcatcacaagaacactaacataccatgaaatcattgtgaaaaacttaaatcatcaataaaggtaaaat |
117 |
Q |
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| T |
29588103 |
atcaggatacaagtttccagctctatacagtatcatcacaagaacactaacataccatgaaatcatagtgaaaaacttaaatcatcaataaaggtaaaat |
29588202 |
T |
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| Q |
118 |
ataccaactaccaagcaatataaaacaactgaaagtataccagcttgcactgtcacccttgtacccttagaaacagaagagtaatgctaagcttatgcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29588203 |
ataccaactaccaagcaatataaaacaactgaaagtataccagcttgcactgtcacccttgtacccttagaaacagaagagtaatgctaagcttatgcag |
29588302 |
T |
|
| Q |
218 |
ttacggtaattcttaatatcgctttactaaactgttttgttcagaaaaccagaatggaatctaagttcaaaacgtcagcattataaagcagattaagccg |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29588303 |
ttacagtaattcttaatatcgctttactaaactgttttgttcagaaaaccagaatggaatctaagttcaaaacgtcagcattataaagcagattaagccg |
29588402 |
T |
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| Q |
318 |
ccatttctactataagatatgttactagaatattgcgatgttgaagagaaccaacttataaacacgctcactgaaactatacaatatatgctctatagtc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29588403 |
ccatttctactataagatatgttactagaatattgcgatgttgaagagaaccaacttataaacacgctcactgaaactatacattatatgctctatagtc |
29588502 |
T |
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| Q |
418 |
tatatacaagctgcaccatgtt |
439 |
Q |
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|||||||||||||||||||||| |
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| T |
29588503 |
tatatacaagctgcaccatgtt |
29588524 |
T |
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