View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_1 (Length: 642)
Name: NF6014_low_1
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 45122913 - 45123546
Alignment:
| Q |
1 |
aggaatatgaaaatttcaatctgttgttgttggctgaaaaaatacatgttggagaagtcctacattaactacttaaattataaaagaagaagtagaacaa |
100 |
Q |
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| T |
45122913 |
aggaatatgaaaatttcaatttgttgttgttgactgaaaaaatacatgttggagaagtcctacattaactacttaaattataaaagaagaggtagaacaa |
45123012 |
T |
|
| Q |
101 |
gataagcaaggttgtttcgtgatctttgcaagaagaacaaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaatattgtt |
200 |
Q |
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||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123013 |
gataaacaaggttgtttcgtgatctttgtaagaagaacaagatgattcctccacttgtttactttattgcttgacaagtcttgtaggtgacaatattgtt |
45123112 |
T |
|
| Q |
201 |
tcttgaagtgcaaaacaaacaaagtgatacttatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaatt |
300 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
45123113 |
tcttgaagtgcaagacaaacaaagtgatacctatatataagctcgatttctgtatttcaagatacatcaatcagaaatattttaagtatatatctgaatt |
45123212 |
T |
|
| Q |
301 |
ttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttggagattgtgggtgtaccgggatcaatggagtgtttgacta |
400 |
Q |
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| T |
45123213 |
ttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttggagattgtgggtgtatcggggtcaatggagtgtttgacta |
45123312 |
T |
|
| Q |
401 |
gtctatgtgttgtaaaagtttgcatatagtattattttctagttgttattggacaatgatcatagtttcgtctccgctttttgaagtttccacctatgtt |
500 |
Q |
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| T |
45123313 |
gtctatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaatgatcatagtttcgtctccgctttttgaagtttctacctatgtt |
45123412 |
T |
|
| Q |
501 |
gtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatgtatccttctatgaatgtc |
600 |
Q |
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| T |
45123413 |
gtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatatatccttctatgaatgtc |
45123512 |
T |
|
| Q |
601 |
tattacagaatattatgaatattagtgatgatgt |
634 |
Q |
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| T |
45123513 |
tattacaaaatattatgaatattagtgatgatgt |
45123546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 34980546 - 34980595
Alignment:
| Q |
138 |
caaggtgattcctccacttatttactttattgcttgacaagtcttgtagg |
187 |
Q |
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| T |
34980546 |
caaggtgattccttcacttgtttactttcttgcttggcaagtcttgtagg |
34980595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 15549756 - 15549684
Alignment:
| Q |
139 |
aaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgc |
211 |
Q |
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| T |
15549756 |
aaggtggttcattcacttgtttcctttcttgcatgacaagtattgtaggccacaatgttgtttcttgaagtgc |
15549684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
410 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
457 |
Q |
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| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 35397486 - 35397399
Alignment:
| Q |
232 |
tatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatact |
319 |
Q |
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||||||||| ||| ||||| |||| ||||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| ||||||| |
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| T |
35397486 |
tatatataaactctctttctttattataagatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatact |
35397399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 12467205 - 12467149
Alignment:
| Q |
167 |
ttgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaaaacaaacaaa |
223 |
Q |
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| T |
12467205 |
ttgcttgataagttttgtaggccacaagcttgtttcttgaagtgcaagacaaacaaa |
12467149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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