View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_12 (Length: 405)
Name: NF6014_low_12
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 42897523 - 42897137
Alignment:
| Q |
1 |
atgggagaccgaaaactagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagtcattcaaacac |
100 |
Q |
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| T |
42897523 |
atgggagaccaaaaattagaaatagatagaccaaaatcatatttcagctaaatagagcggtcaaaattgagtagttttcacaaaaaagtcattcaaacac |
42897424 |
T |
|
| Q |
101 |
atttattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttgaataagaacacccataaattgtgaaattg |
200 |
Q |
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| T |
42897423 |
attcattagtattcagttttgtgcgtttatttcttcttttatccattcacgattttaatttggatggtttcaataagaacacccctaaattgtgaaattg |
42897324 |
T |
|
| Q |
201 |
atggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgggaagcaatggcgtatcttatatgcgtgtaacaggctgaaaacaaaaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897323 |
atggcttgtggtgagctcagctgatgatttgtgtgaagatcaagactatgagaagcaatggcgtatcttatatgcgtgtaacaggctgaaaacaaaaaac |
42897224 |
T |
|
| Q |
301 |
atattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtatactgaagac |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897223 |
atattacactgttgcgatcaagggtaaaagcaaaatgctataagtgtaatgatataaggttaaaacaaaatatagtatactgaagac |
42897137 |
T |
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