View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_14 (Length: 387)
Name: NF6014_low_14
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 171 - 387
Target Start/End: Complemental strand, 55573883 - 55573663
Alignment:
| Q |
171 |
cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacata----aaaaccaaaagatgtcgtatttg |
266 |
Q |
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| T |
55573883 |
cgtatatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacatacataaaaaccaaaagatgtcgtatttg |
55573784 |
T |
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| Q |
267 |
atgtcaacatatcatttcttcaaaatagggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaacgagcattatgacaagc |
366 |
Q |
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| T |
55573783 |
atgtcaaaatatcatttcttcaaaataaggaaccttgtgatttcctgtgaaatctaaaccaacacaagaaaataaaccaaaaaagagtattatgacaaga |
55573684 |
T |
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| Q |
367 |
aggggacacaggaattaatta |
387 |
Q |
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| T |
55573683 |
agtggacacaggaattaatta |
55573663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 55574041 - 55573930
Alignment:
| Q |
13 |
atactggcaaacatgttgcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtgg |
112 |
Q |
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| T |
55574041 |
atactgccaaacatgttgcatccgtaaaaacatgacacaaaagtaaagaaatttgacatcaagttggtattaaattttcccccactaaagtggtaagtgg |
55573942 |
T |
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| Q |
113 |
ttgtgagtcttt |
124 |
Q |
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| T |
55573941 |
ttgtgagtcttt |
55573930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 33035869 - 33035770
Alignment:
| Q |
288 |
aaaatagggaaccttgtgatttcctgtgaaatccaaaccaacacaagaaaataaaccaaaaacgagcattatgacaagcaggggacacaggaattaatta |
387 |
Q |
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| T |
33035869 |
aaaataaggaacctcgtgatttcctttgaaatccaaaccaacacaataaaataaaacaaaaaagactattaggacaagaagtggacacaagaattcatta |
33035770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 20809151 - 20809076
Alignment:
| Q |
177 |
tgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
252 |
Q |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacacacaaaaaccaaa |
20809076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 16560792 - 16560857
Alignment:
| Q |
174 |
atatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaataca |
239 |
Q |
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| T |
16560792 |
atatatttatctttatctctcttttactttttatcatatacaacttatatgagtttaaaaaataca |
16560857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 6527418 - 6527458
Alignment:
| Q |
212 |
tacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
252 |
Q |
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| T |
6527418 |
tacaacttgcatgcatttaaaaaatacacataaaaaccaaa |
6527458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 10313839 - 10313896
Alignment:
| Q |
195 |
tgttactttttatctcttacaacttacgtgaatttaaaaaatacacataaaaaccaaa |
252 |
Q |
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| T |
10313839 |
tgttactttttatcttgtacaacttacatgaatttcaaaattacacacaaaaatcaaa |
10313896 |
T |
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