View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_15 (Length: 355)
Name: NF6014_low_15
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 10968084 - 10967768
Alignment:
| Q |
17 |
aaaactcggcttcatcagggtaatcatctgttgaaatattctttggtaacccaggaattcgaagaggcgtatggagatccttaatgggttttgtagcatt |
116 |
Q |
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| T |
10968084 |
aaaactcggcttcatcagggtaatcatctgttgaaatattttttggtaacccaggaattcgaagaggcgtatggagatccttaatgggttttgtagcatt |
10967985 |
T |
|
| Q |
117 |
ttggtgaatagttggatagtgaaggaaaagggctaaaacaatagcacctgaagtgaagtaaaagtaagtggggaaatcaagcttggtagtgacttttgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||| |
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| T |
10967984 |
ttggtgaatagttggatagtgaaggaaaagggctaaaacaatagcacctgaagtgaagtaaaagtaagtgggaatttcaagctttgtagtgactttcgag |
10967885 |
T |
|
| Q |
217 |
gcatcatatgtgagaaaatctaagataactcctttgaggtttgtggttttggaaatggattggagaatattgtgaacatagtgattgctttggtgagaga |
316 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10967884 |
gcattatatgtgagaaaatctaagataactcctttgaggtttgtggttttggaaatggattggagaatattgtgaacatagttattgctttggtgagaga |
10967785 |
T |
|
| Q |
317 |
gctcaagggtaagtaaa |
333 |
Q |
| |
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||||||||||||||||| |
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| T |
10967784 |
gctcaagggtaagtaaa |
10967768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 11002232 - 11001925
Alignment:
| Q |
25 |
gcttcatcagggtaatcatctgttgaaatattctttggtaacccaggaattcgaagaggcgtatggagatccttaatgggttttgtagcattttggtgaa |
124 |
Q |
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| T |
11002232 |
gcttcatcggggtaatcgtctgtcgaaaagttctttggtaacccgggaattttaagaggcatatgaagatccttgatgggttttgtagctttttggtgaa |
11002133 |
T |
|
| Q |
125 |
tagttggatagtgaaggaaaagggctaaaacaatagcacctgaagtgaagtaaaagtaagtggggaaatcaagcttggtagtgacttttgaggcatcata |
224 |
Q |
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| T |
11002132 |
tggttggaaagtaaaggaaagtggaaagaatggtagcacctgaagtatagtaaaagtaagtaggaatttcaaggttggtggtgacttgtgaggcactata |
11002033 |
T |
|
| Q |
225 |
tgtgagaaaatctaagataactcctttgaggtttgtggttttggaaatggattggagaatattgtgaacatagtgattgctttggtgagagagctcaagg |
324 |
Q |
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||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||| |||||||||| || ||||||| ||| |||| ||||| |
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| T |
11002032 |
ggtgaggaaatctaagataatacctttgaagtttgtggttttggaaatggagttgagaatgttgtgaacatgatggttgcttttgtgtgagacttcaagt |
11001933 |
T |
|
| Q |
325 |
gtaagtaa |
332 |
Q |
| |
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|||||||| |
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| T |
11001932 |
gtaagtaa |
11001925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 284
Target Start/End: Complemental strand, 10981993 - 10981740
Alignment:
| Q |
31 |
tcagggtaatcatctgttgaaatattctttggtaacccaggaattcgaagaggcgtatggagatccttaatgggttttgtagcattttggtgaatagttg |
130 |
Q |
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|||||||||||||||||||||| | ||||||||||||| |||||| |||||||| |||| ||||||||||| |||||||||||||||| | || | ||| |
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| T |
10981993 |
tcagggtaatcatctgttgaaagactctttggtaaccctggaatttgaagaggcatatgaagatccttaataggttttgtagcattttcataaacaattg |
10981894 |
T |
|
| Q |
131 |
gatagtgaaggaaaagggctaaaacaatagcacctgaagtgaagtaaaagtaagtggggaaatcaagcttggtagtgacttttgaggcatcatatgtgag |
230 |
Q |
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|| | ||||||||| ||||| || ||||||||||||||| | ||||||||||| |||| || | || | || |||| ||||||| ||| |||| |
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| T |
10981893 |
gaaaatgaaggaaagtggctacaaagatagcacctgaagtgtaataaaagtaagtcgggatctcgactttcttggttacttgtgaggcactataggtgaa |
10981794 |
T |
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| Q |
231 |
aaaatctaagataactcctttgaggtttgtggttttggaaatggattggagaat |
284 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| || |||||||| |
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| T |
10981793 |
gaaatctaagataacagctttgaggtttgtggttttggaaatagaatggagaat |
10981740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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