View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_16 (Length: 333)
Name: NF6014_low_16
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8977624 - 8977944
Alignment:
| Q |
1 |
tcaaatagcggctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgacttcaacagta |
100 |
Q |
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| T |
8977624 |
tcaaatagcggctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgacttcaacagta |
8977723 |
T |
|
| Q |
101 |
ctatagcattgtagcatagaggaatttgaacacagcactatttttagtgatctgcaattcagaacattggataatgatggcaacatcgcaaacttgttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
8977724 |
ctatagcattgtagcatagaggaatttgaacacagcactatttttagtgatctgcaattcacaacattggataatgatggcaacatcacaaacttgttta |
8977823 |
T |
|
| Q |
201 |
aggtttgaatatctaatctgagtttcatttgcagggtactggtctggttgttcatgatgccggtgcttattgtatgagtatggcatctacttacaatcta |
300 |
Q |
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| T |
8977824 |
acgtttgaatatctaatctgagtttcatttgcagggtactggtctggttgttcatgatgccggtgcttattgtatgagtatggcatctacttacaatcta |
8977923 |
T |
|
| Q |
301 |
aagatgcgacctcctgagtat |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
8977924 |
aagatgcgacctcctgagtat |
8977944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 17501128 - 17501068
Alignment:
| Q |
30 |
tgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgac |
90 |
Q |
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| T |
17501128 |
tgaacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaatagtgac |
17501068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50402741 - 50402654
Alignment:
| Q |
1 |
tcaaatagcggctata--gcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatag |
86 |
Q |
| |
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|||||||||||||||| ||||||| | |||||||||||||||| ||||||||||| |||||| |||| || | |||||||||||| |
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| T |
50402741 |
tcaaatagcggctatacagcatagcatgatctgaacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatag |
50402654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 34881699 - 34881817
Alignment:
| Q |
12 |
ctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgacttcaacagtactatagcattg |
111 |
Q |
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||||| ||||||| || ||||||||||||||| ||||| | |||||||||| ||||||| | ||||||||||||| || | | | |||| ||||| |
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| T |
34881699 |
ctataacatagcggaatatgaacaaatcactatcgttccacgatacgctatttagtacaaagtcttgtcaaatagtgtctactgcggctttataacattg |
34881798 |
T |
|
| Q |
112 |
tagcatagaggaatttgaa |
130 |
Q |
| |
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|||||||| |||||||||| |
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| T |
34881799 |
tagcatagtggaatttgaa |
34881817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 26373060 - 26373145
Alignment:
| Q |
3 |
aaatagcggctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtg |
88 |
Q |
| |
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||||||| ||||| |||||| |||| ||||||| ||||||| |||| | |||||||||| ||||||| | |||||||||||||| |
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| T |
26373060 |
aaatagcagctattgcatagtgaaaattgaacaactcactattgttctgtgatacgctatttagtacaaagtgttgtcaaatagtg |
26373145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 7102316 - 7102418
Alignment:
| Q |
30 |
tgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgacttcaacagtactatagcattgtagcatagaggaatttga |
129 |
Q |
| |
|
|||| ||||| ||||||||| |||||| | |||| ||| ||| | ||||| |||||| |||| ||||||||||||||| ||| || | | ||||||||| |
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| T |
7102316 |
tgaaaaaatcgctatagttctgcaatatgttatttagtgcaaagtgttgtgaaatagcgactacaacagtactatagcgttgcggcgtggcggaatttga |
7102415 |
T |
|
| Q |
130 |
aca |
132 |
Q |
| |
|
||| |
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| T |
7102416 |
aca |
7102418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 15268540 - 15268600
Alignment:
| Q |
30 |
tgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaatagtgac |
90 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| || ||||||| | | |||||||||||||| |
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| T |
15268540 |
tgaacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaatagtgac |
15268600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 11570745 - 11570689
Alignment:
| Q |
12 |
ctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagta |
68 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| |||||||||||| |||||||||| |
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| T |
11570745 |
ctatagcatagcagaatttgaacaaatcattattgttccgcaatacactattcagta |
11570689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 13458864 - 13458792
Alignment:
| Q |
12 |
ctatagcatagcgaaagctgaacaaatcactatagttccgcaatacgctattcagtacaaggcgttgtcaaat |
84 |
Q |
| |
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||||| ||||| |||| |||||||||||| || |||||| ||||||||||| |||| || | |||||||||| |
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| T |
13458864 |
ctatatcatagtgaaatttgaacaaatcaccattgttccgtaatacgctatttagtataaagtgttgtcaaat |
13458792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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