View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_20 (Length: 306)
Name: NF6014_low_20
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 49634457 - 49634158
Alignment:
| Q |
1 |
tagcctggccaatagttcctgcgctgtgtgctcnnnnnnnnnnnnnnnncgctttgcaagagttattatgggttaagactcttaaccactacttaatact |
100 |
Q |
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| T |
49634457 |
tagcctggccaatagttcctgcgctgtgtgctcaaagaaaaaagaaaaacgctttgcaagagttattatgggttaagactcttaaccactacttaatact |
49634358 |
T |
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| Q |
101 |
tacccgaaaggtcaacagtattcgtatgtatggaactccttgtttgagtctttactgatttatcacaagctgcaattaccattctaaatggaatggttct |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49634357 |
tacccgaaaggtcaacagtattcgtatgcatggaactccttgtttgagtctttactgatttatcacaagctgcaattaccattctaaatggaatggttct |
49634258 |
T |
|
| Q |
201 |
ta---cttagacatttttctgatttcattgaattatctcaacatttaacaaaaatttggttcactttttacacatgtatcaacagtcactctgatgatgt |
297 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49634257 |
tacttcttagacatttttctgatttcattgaattatctcaacatttaacaaaaatttggttcactttttacacatgtatcaacagtcactctgaagatgt |
49634158 |
T |
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