View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_21 (Length: 289)
Name: NF6014_low_21
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 43539470 - 43539215
Alignment:
| Q |
16 |
acaaggatattggacaccaacacgcaatcaccgataactaatttaagaaaatcacataatttaatttcaatgtaattatatgtgtcggtgttcgtgtttc |
115 |
Q |
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| T |
43539470 |
acaaggatattggacaccaacacgcagtcaccgataactaatttaaaaaaatcacataattcaatttcaatgtaactatatgtgtcggtgttcgtgtttc |
43539371 |
T |
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| Q |
116 |
atggcctccgggtgttgctctatataannnnnnnnccaagtcttatcactagttacccaagattaggtgatacctggcgtaggaatcaatgtaattggag |
215 |
Q |
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||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43539370 |
atggcctacgggtattgctctatataattttttttccaagtcttatcactagttacccaagattaggtgatacctggcgtaggaatcaatgtaattggag |
43539271 |
T |
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| Q |
216 |
gagaaacatggacaagaaaaatcctagcaccaggagaaacagcatgatcaagaacc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43539270 |
gagaaacatggacaagaaaaatcctagcaccaggagaaacagcatgatcaagaacc |
43539215 |
T |
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