View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_24 (Length: 282)
Name: NF6014_low_24
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 45122857 - 45122602
Alignment:
| Q |
10 |
attatactagtaacaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
109 |
Q |
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| T |
45122857 |
attatactagtaccaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
45122758 |
T |
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| Q |
110 |
ttaaaaacttgatcattgttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
209 |
Q |
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| T |
45122757 |
ttaaaaacttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
45122658 |
T |
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| Q |
210 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatttc |
265 |
Q |
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| T |
45122657 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatttc |
45122602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 45121969 - 45121904
Alignment:
| Q |
174 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
239 |
Q |
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| T |
45121969 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
45121904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 45122023 - 45121979
Alignment:
| Q |
210 |
ttaaatgtattgaaatataaaagataataagtccaatatatttta |
254 |
Q |
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| T |
45122023 |
ttaaatgtattgaaatataaaagattataagcccaacatttttta |
45121979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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