View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6014_low_27 (Length: 247)

Name: NF6014_low_27
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6014_low_27
NF6014_low_27
[»] chr3 (11 HSPs)
chr3 (7-247)||(2759549-2759789)
chr3 (29-247)||(2807602-2807820)
chr3 (19-247)||(2818892-2819120)
chr3 (19-247)||(2855385-2855613)
chr3 (19-247)||(2790655-2790883)
chr3 (19-243)||(2838175-2838399)
chr3 (19-247)||(5413221-5413449)
chr3 (21-247)||(2769404-2769630)
chr3 (26-247)||(2797696-2797917)
chr3 (19-247)||(2749330-2749558)
chr3 (31-117)||(3201409-3201495)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-247)||(5727-5955)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 2759789 - 2759549
Alignment:
Q  7 tggacaacgctgaccaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactaga 106  Q
    ||||||||||   ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  2759789 tggacaacgccctccaagatcatatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactaga 2759690  T
Q  107 aatgatttcttgaaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcgg 206  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||    
T  2759689 aatgatttcttgaaaaaatctgcaacttgcataattctagtggtgattatgatcctactacctttgttgttattaggcatggcaaattcaacctggtcgg 2759590  T
Q  207 aaaaatcttcttcccatacatcatcaaagaatatcaaatac 247  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  2759589 aaaaatcttcttgccatacatcatcaaagaatatcaaatac 2759549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 2807820 - 2807602
Alignment:
Q  29 aatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaaaaaatctg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  2807820 aatctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaaggatttcttgaaaaaatctg 2807721  T
Q  129 cagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcccatacatc 228  Q
    || ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | |||||||||||| ||||||||||||| |||||||||    
T  2807720 caacttgcatcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatc 2807621  T
Q  229 atcaaagaatatcaaatac 247  Q
    |||||||||||||||||||    
T  2807620 atcaaagaatatcaaatac 2807602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2819120 - 2818892
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  2819120 accaagctcagacctaaatactttcttgcagaagagttcccatgctttgtttggagtcaaaagttgcaagttgtgaacatgaactagaaatgatttcttg 2819021  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| ||||||||||||| || |||||||||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||||||||||    
T  2819020 aaaaaatctgcaacttgcatcattcttgtggtgattatgatcctactacctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttctt 2818921  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||| ||||||    
T  2818920 gccatacatcatcaaagaatattaaatac 2818892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2855385 - 2855613
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||| |||||||||    
T  2855385 accaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttg 2855484  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||    
T  2855485 aaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttctt 2855584  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||| |||||||||||||||| |||||||    
T  2855585 gccaaacatcatcaaagaataccaaatac 2855613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2790883 - 2790655
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||| |||||||||    
T  2790883 accaagctcaaatctgaatgctttcttgcagaagagttcccatgctttgtttggtgtcaaaagttgcaagttgtgaacatgaactagaaaagatttcttg 2790784  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| |||||||||||||||| |||||||||||||| | |||||| ||||| || || ||||| | ||||| ||||||||||||||||||||    
T  2790783 aaaaaatctgcaacttgcatcattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttctt 2790684  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     |||||||||||| |||||||||||||||    
T  2790683 gccatacatcatcgaagaatatcaaatac 2790655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 2838175 - 2838399
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||| |||||||||    
T  2838175 accaggttcaaatctaaatactttcttacagaagagttcccatgctttgtttggaggcaaaagttgcaggttatgaatatgagttagaaaggatttcttg 2838274  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  2838275 aaaaattctgcaacatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttctt 2838374  T
Q  219 cccatacatcatcaaagaatatcaa 243  Q
     ||| ||||||||||||||||||||    
T  2838375 gccaaacatcatcaaagaatatcaa 2838399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 5413449 - 5413221
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||||||||||| ||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||    
T  5413449 accaagttcaaatccaaacaccttcttgcagtaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatatactagaaaggattttttg 5413350  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||| ||| |||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || | |||||||||||| || ||||||| ||    
T  5413349 aaaaaatccgcaacttgcatcattctagtggtgattatgatcctactacctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgtt 5413250  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||||||||||    
T  5413249 gccatacatcatcaaagaatatcaaatac 5413221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 2769630 - 2769404
Alignment:
Q  21 caagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaa 120  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||  ||||||| |||||||| |||||||||||    
T  2769630 caagttcaaatctgaatgctttcttgcagaagagttcccatgctttgttaggaggcaaaagttgcatgttaagaacatgaactagaaaggatttcttgaa 2769531  T
Q  121 aaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcc 220  Q
    |||||||||| | ||||||||||| || || ||||||||||| |||| ||| ||||| || |||||||  | |||||||||||||||||||||||||| |    
T  2769530 aaaatctgcaacatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgc 2769431  T
Q  221 catacatcatcaaagaatatcaaatac 247  Q
    |||||||||||||||||||||||||||    
T  2769430 catacatcatcaaagaatatcaaatac 2769404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 2797917 - 2797696
Alignment:
Q  26 tcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttgaaaaaat 125  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||| |||| ||||||||||||||||    
T  2797917 tcaaatctgaatgctttcttgcagaagagttcccatgatttgtttggtgtcaaaagttgcaagttgtgaacatgaacttgaaaggatttcttgaaaaaat 2797818  T
Q  126 ctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttcttcccatac 225  Q
    ||||| ||||||||||||| || ||||| ||||||||  |  |||| ||||| ||||||||||| | |||||||||||| ||||| ||||||| ||||||    
T  2797817 ctgcaacttgcatcattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatac 2797718  T
Q  226 atcatcaaagaatatcaaatac 247  Q
    ||||||||||||||||||||||    
T  2797717 atcatcaaagaatatcaaatac 2797696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2749558 - 2749330
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||| |||    
T  2749558 accaagctcatatctaaatactctcttgcagaaaagttcccatgctttgtttggaggcaaaagttgcaggttgtgaatatgagttagaaaggattttttg 2749459  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    |||||||||||| | | |||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| | || ||||||||| | |||||||||||    
T  2749458 aaaaaatctgcaacatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttctt 2749359  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     |||||| |||||||||||||||||||||    
T  2749358 gccatacgtcatcaaagaatatcaaatac 2749330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 3201495 - 3201409
Alignment:
Q  31 tctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttctt 117  Q
    ||||||| | || ||||| || |||||||| |||||||||||||||||| |||| |||| ||||| ||| || ||||| ||||||||    
T  3201495 tctaaatgccttgttgcaaaacagttcccacgctttgtttggaggcaaaggttgtaggtggtgaatatgaacaagaaaagatttctt 3201409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 5727 - 5955
Alignment:
Q  19 accaagttcaaatctaaatactttcttgcagaagagttcccatgctttgtttggaggcaaaagttgcaggttgtgaacatggactagaaatgatttcttg 118  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||| ||| |||||||||    
T  5727 accaggttcaaatctaaatacttttttgcagaagagttcccatactttgtttggaggcaagagttgcagtttgtgaacatgaactataaaggatttcttg 5826  T
Q  119 aaaaaatctgcagcttgcatcattctagttgtgattatgatcctgctaccttttttgttgttaggcatggccatttcaacctggtcggaaaaatcttctt 218  Q
    ||||| || ||| |  |||||||||| || |||||||| ||||| |||||||| ||||| ||||||||||| | |||||||||||| |||||||||||||    
T  5827 aaaaattcggcaacaagcatcattcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttctt 5926  T
Q  219 cccatacatcatcaaagaatatcaaatac 247  Q
     ||||||||||||||||||||||||||||    
T  5927 gccatacatcatcaaagaatatcaaatac 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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