View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_29 (Length: 232)
Name: NF6014_low_29
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 54720907 - 54721104
Alignment:
| Q |
19 |
ctatttatacctcatgtaacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtca |
118 |
Q |
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| T |
54720907 |
ctatttatacctcatgtaacaatcggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtca |
54721006 |
T |
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| Q |
119 |
aaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctatttt |
216 |
Q |
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| T |
54721007 |
aaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtgttataaaatgaagtgatatgaagcctatttt |
54721104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 54714013 - 54714184
Alignment:
| Q |
45 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaaagcca |
144 |
Q |
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| T |
54714013 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattattttctcaagcaaagcca |
54714112 |
T |
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| Q |
145 |
cattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctatttt |
216 |
Q |
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| T |
54714113 |
cattaattcacttattttttcgtttaaggaaaaatgttgtgttataaattgaagtgatatgaagcctatttt |
54714184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 54680285 - 54680457
Alignment:
| Q |
35 |
taacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattact---ttc |
131 |
Q |
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| T |
54680285 |
taacaattggccggtcaattaattaaccatcatatttaacgccatgc----ttcccacacggttaaactagcttacttttgtcaaaatattactaatttc |
54680380 |
T |
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| Q |
132 |
tcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaag |
208 |
Q |
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| T |
54680381 |
tcacgcaaagccacactaattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaag |
54680457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 54726646 - 54726731
Alignment:
| Q |
67 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
152 |
Q |
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| T |
54726646 |
tatttgacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctaacgcaaagtcacattaatt |
54726731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 5302512 - 5302597
Alignment:
| Q |
67 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
152 |
Q |
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| T |
5302512 |
tattttacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctcacgcaaagtcacattaatt |
5302597 |
T |
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