View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_30 (Length: 221)
Name: NF6014_low_30
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1884148 - 1883938
Alignment:
| Q |
1 |
atgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||| |
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| T |
1884148 |
atgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatcc |
1884049 |
T |
|
| Q |
101 |
atgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaatgttgttagat |
200 |
Q |
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||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884048 |
atgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaatgttgttagat |
1883949 |
T |
|
| Q |
201 |
gcttttgatga |
211 |
Q |
| |
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||||||||||| |
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| T |
1883948 |
gcttttgatga |
1883938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 1878132 - 1877947
Alignment:
| Q |
5 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgt |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||| ||| |||||||| |||| ||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
1878132 |
ttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgt |
1878033 |
T |
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| Q |
105 |
aaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaat |
190 |
Q |
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||||||||||| |||||||||| ||||||||| || |||||| ||| || ||||||||||| |||||||||||||| |||||||| |
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| T |
1878032 |
aaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaat |
1877947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1911098 - 1910913
Alignment:
| Q |
1 |
atgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| || ||| ||| |||| |
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| T |
1911098 |
atgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatcc |
1910999 |
T |
|
| Q |
101 |
atgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaacaatcac-aaaccttgttgaagttc |
185 |
Q |
| |
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||||| ||||||||| |||||||||| ||||| | ||||| ||| | || |||||||||||||| |||| |||||||||||| |
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| T |
1910998 |
atgtacaaggaccatcttcttgtcatgtttctgtcacttctatgttctttcagttacacaacaatcacaaaactttgttgaagttc |
1910913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 1902049 - 1901922
Alignment:
| Q |
5 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgt |
104 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | |||||||| |
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| T |
1902049 |
ttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtggcaaaacatccatgt |
1901950 |
T |
|
| Q |
105 |
aaaaggaccattttcttgtcatttttct |
132 |
Q |
| |
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||| |||||| |||||||||| ||||| |
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|
| T |
1901949 |
aaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1890792 - 1890602
Alignment:
| Q |
1 |
atgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||| | ||||| ||||||||| ||| | | |||| |
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| T |
1890792 |
atgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatcc |
1890693 |
T |
|
| Q |
101 |
atgtaaaaggaccattttcttgtcat-ttttctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaat |
190 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| || ||||||||| |||| ||||||||||||||||| || ||||||||||||| |
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|
| T |
1890692 |
ttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
1890602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 1895638 - 1895509
Alignment:
| Q |
5 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgt |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| | ||| | ||||| ||||| | |||||| | | |||||||| |
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| T |
1895638 |
ttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattggcaaaacatccatgt |
1895539 |
T |
|
| Q |
105 |
aaaaggaccattttcttgtcatttttctat |
134 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |
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|
| T |
1895538 |
aaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 11537577 - 11537456
Alignment:
| Q |
5 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgt |
104 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| ||| |||||||| || |||| |||||||||||| |||| ||||||| |||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccatgtcacatcactcatagcctataatcactacaactggtagaaaatctatgt |
11537478 |
T |
|
| Q |
105 |
aaaaggaccattttcttgtcat |
126 |
Q |
| |
|
|||| || ||| ||||| |||| |
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|
| T |
11537477 |
aaaaagatcatcttcttttcat |
11537456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 11549249 - 11549123
Alignment:
| Q |
5 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaacacattcattgcctataatcaccacaattggtagacaatccatgt |
104 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| ||||||||| |
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| T |
11549249 |
ttgttcatcccttgcggtggtgcttctttgaacaaagtcaacaaacccatgtcacatcattcata-cctataatcactacaaccggtagaaaatccatgt |
11549151 |
T |
|
| Q |
105 |
aaaaggaccattttcttgtcatttttct |
132 |
Q |
| |
|
|||| |||||| ||||| |||| ||||| |
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|
| T |
11549150 |
aaaaagaccatcttcttttcatctttct |
11549123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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