View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6014_low_4 (Length: 504)

Name: NF6014_low_4
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6014_low_4
NF6014_low_4
[»] chr2 (22 HSPs)
chr2 (207-477)||(6227757-6228028)
chr2 (20-145)||(6227570-6227695)
chr2 (209-275)||(40158726-40158792)
chr2 (209-261)||(35379026-35379078)
chr2 (209-275)||(7871651-7871717)
chr2 (210-276)||(34652031-34652097)
chr2 (216-261)||(28677669-28677714)
chr2 (210-275)||(37034031-37034096)
chr2 (209-261)||(15977993-15978045)
chr2 (209-261)||(16867747-16867799)
chr2 (209-276)||(1939327-1939394)
chr2 (209-276)||(36852480-36852547)
chr2 (209-276)||(43065445-43065512)
chr2 (209-276)||(43910994-43911061)
chr2 (215-261)||(18840810-18840856)
chr2 (221-255)||(24098122-24098156)
chr2 (209-275)||(29316771-29316837)
chr2 (226-275)||(41817193-41817242)
chr2 (215-275)||(1647250-1647310)
chr2 (209-261)||(3227693-3227745)
chr2 (209-261)||(7283004-7283056)
chr2 (209-261)||(38078420-38078472)
[»] chr8 (18 HSPs)
chr8 (207-274)||(27754410-27754477)
chr8 (209-261)||(28769349-28769401)
chr8 (210-261)||(30918122-30918173)
chr8 (210-261)||(42215092-42215143)
chr8 (211-275)||(11795102-11795166)
chr8 (209-260)||(44236834-44236885)
chr8 (215-261)||(3536955-3537001)
chr8 (209-263)||(4762517-4762571)
chr8 (226-276)||(11183570-11183620)
chr8 (226-276)||(25869261-25869311)
chr8 (210-276)||(26479794-26479860)
chr8 (209-262)||(41336654-41336707)
chr8 (209-262)||(43504759-43504812)
chr8 (209-253)||(6864477-6864521)
chr8 (229-261)||(6950350-6950382)
chr8 (209-261)||(8062337-8062389)
chr8 (209-253)||(27028839-27028883)
chr8 (209-261)||(30277255-30277307)
[»] chr6 (12 HSPs)
chr6 (221-275)||(7785740-7785794)
chr6 (211-263)||(20512652-20512704)
chr6 (210-276)||(3155185-3155250)
chr6 (228-276)||(281843-281891)
chr6 (216-276)||(2460146-2460206)
chr6 (210-274)||(4420652-4420716)
chr6 (212-275)||(3201943-3202006)
chr6 (229-276)||(6536975-6537022)
chr6 (226-261)||(27909648-27909683)
chr6 (209-251)||(2205610-2205652)
chr6 (209-255)||(29274245-29274291)
chr6 (209-255)||(33787761-33787807)
[»] chr5 (26 HSPs)
chr5 (209-276)||(12242705-12242772)
chr5 (209-261)||(37588370-37588422)
chr5 (211-262)||(38104866-38104917)
chr5 (209-274)||(11707063-11707128)
chr5 (211-263)||(20028498-20028550)
chr5 (209-261)||(33533549-33533601)
chr5 (209-261)||(37526209-37526261)
chr5 (209-261)||(37611225-37611277)
chr5 (209-261)||(37787955-37788007)
chr5 (209-276)||(10272426-10272493)
chr5 (212-254)||(6183455-6183497)
chr5 (215-261)||(12521542-12521588)
chr5 (234-275)||(1899187-1899228)
chr5 (212-261)||(12975358-12975406)
chr5 (209-254)||(17368684-17368729)
chr5 (209-254)||(27565367-27565412)
chr5 (212-261)||(28413294-28413343)
chr5 (209-261)||(37690646-37690699)
chr5 (225-262)||(40590782-40590819)
chr5 (209-261)||(4014434-4014486)
chr5 (209-261)||(7319018-7319070)
chr5 (209-261)||(8651363-8651414)
chr5 (209-261)||(15074759-15074811)
chr5 (209-261)||(18875369-18875421)
chr5 (209-261)||(18906350-18906402)
chr5 (226-274)||(19138714-19138762)
[»] chr4 (18 HSPs)
chr4 (209-259)||(18628555-18628605)
chr4 (215-260)||(2592320-2592365)
chr4 (209-261)||(53673668-53673720)
chr4 (209-262)||(35064863-35064916)
chr4 (209-261)||(7694020-7694072)
chr4 (209-261)||(11802542-11802594)
chr4 (209-261)||(17884076-17884128)
chr4 (216-276)||(27123347-27123407)
chr4 (226-261)||(5131260-5131295)
chr4 (209-260)||(14011242-14011293)
chr4 (209-255)||(825506-825552)
chr4 (209-275)||(23819097-23819163)
chr4 (210-275)||(19304935-19305000)
chr4 (209-261)||(4798576-4798628)
chr4 (209-261)||(8468956-8469008)
chr4 (209-261)||(29263378-29263430)
chr4 (221-261)||(33534179-33534219)
chr4 (209-261)||(46110211-46110263)
[»] chr1 (26 HSPs)
chr1 (221-275)||(44815299-44815353)
chr1 (210-275)||(10199404-10199469)
chr1 (209-261)||(12564509-12564561)
chr1 (209-261)||(28077079-28077131)
chr1 (209-261)||(30371156-30371208)
chr1 (211-261)||(11893603-11893653)
chr1 (211-276)||(37593679-37593744)
chr1 (209-261)||(16322857-16322909)
chr1 (209-261)||(47598431-47598483)
chr1 (231-274)||(4549260-4549303)
chr1 (210-261)||(14629976-14630027)
chr1 (211-258)||(35590905-35590952)
chr1 (221-275)||(1565531-1565585)
chr1 (221-275)||(6292513-6292567)
chr1 (215-261)||(26916215-26916261)
chr1 (209-275)||(27140486-27140552)
chr1 (209-275)||(27963366-27963432)
chr1 (214-276)||(46252677-46252739)
chr1 (78-124)||(49365935-49365981)
chr1 (209-261)||(7137008-7137060)
chr1 (209-261)||(15558225-15558277)
chr1 (209-261)||(23902077-23902129)
chr1 (215-275)||(28689448-28689508)
chr1 (209-261)||(34290244-34290296)
chr1 (209-261)||(35179147-35179199)
chr1 (229-261)||(48748325-48748357)
[»] chr7 (10 HSPs)
chr7 (209-274)||(7244688-7244753)
chr7 (221-276)||(46082056-46082111)
chr7 (228-276)||(12234884-12234932)
chr7 (209-261)||(24363611-24363663)
chr7 (209-276)||(33645956-33646022)
chr7 (210-260)||(25596042-25596092)
chr7 (209-254)||(24909672-24909717)
chr7 (209-253)||(39505964-39506008)
chr7 (209-261)||(44821967-44822019)
chr7 (209-261)||(47559611-47559663)
[»] scaffold0089 (1 HSPs)
scaffold0089 (211-263)||(33635-33687)
[»] chr3 (18 HSPs)
chr3 (211-263)||(13371127-13371179)
chr3 (209-276)||(37273142-37273209)
chr3 (209-272)||(41633368-41633431)
chr3 (220-262)||(5292529-5292571)
chr3 (209-255)||(14548737-14548783)
chr3 (209-255)||(44295537-44295583)
chr3 (211-262)||(23793594-23793645)
chr3 (227-261)||(21862185-21862219)
chr3 (209-255)||(24887299-24887345)
chr3 (209-275)||(54180776-54180842)
chr3 (226-275)||(37825147-37825196)
chr3 (229-274)||(45432936-45432981)
chr3 (209-261)||(2719476-2719528)
chr3 (209-261)||(20669180-20669232)
chr3 (209-253)||(32582752-32582796)
chr3 (209-261)||(40665437-40665489)
chr3 (228-276)||(43115083-43115131)
chr3 (221-261)||(48991871-48991911)
[»] scaffold0153 (2 HSPs)
scaffold0153 (227-273)||(6492-6538)
scaffold0153 (227-273)||(13512-13558)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 207 - 477
Target Start/End: Original strand, 6227757 - 6228028
Alignment:
Q  207 tggttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagtaattaggttcactcaattgtgttaatggca 306  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227757 tggttttcataagctattttggagagcttatggtaacaagctgaaaacaacttatactcatgtcataagtaattaggttcactcaattgtgttaatggca 6227856  T
Q  307 attttgaagaatgcgattgacatctatacatattgactagagctagagtgtgttaataat--agtaacttcaacatagctcacaattttcaagagttgtt 404  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  6227857 attttgaagaatgtgattgacatctatacatattgactagagctaga-agtgttaataataaaataacttcaacatagctcacaattttcaagagttgtt 6227955  T
Q  405 ttaaacatgcatgtgtcacttggtcaataatttttcatcttatttattgcatagttgcgtgtgtgtacttgaa 477  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227956 ttgaacatgcatgtgtcacttggtcaataatttttcatcttatttattgcatagttgcgtgtgtgtacttgaa 6228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 6227570 - 6227695
Alignment:
Q  20 ttggtatacttgattccactgtgctcgatatagtgtgaaagaaccgttctggattaaagctctatttggataaacaccttagttaagcgtttagagcata 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227570 ttggtatacttgattccactgtgctcgatatggtgtgaaagaaccgttctggattaaagctctatttggataaacaccttagttaagcgtttagagcata 6227669  T
Q  120 aacgtctatcatgtagatgtttttgc 145  Q
    ||||||||||||||||||||||||||    
T  6227670 aacgtctatcatgtagatgtttttgc 6227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 40158726 - 40158792
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||| |||| |||||||||||||  | ||||||||||||||||||||  |||||||||||    
T  40158726 gttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataag 40158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 35379078 - 35379026
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||||||||||    
T  35379078 gttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttat 35379026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 7871651 - 7871717
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||| | ||||| ||||||||||| ||||||||||||||| |||||  |||| |||||||    
T  7871651 gttttcataagctcttttgaagagcttatggaaataagctgaaaacaccttatgatcatatcataag 7871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 34652097 - 34652031
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||| ||| ||||||||||||||| |||||| |||||||| |||||   ||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagt 34652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 28677714 - 28677669
Alignment:
Q  216 taagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||    
T  28677714 taagttattttggagagcttatggaaataagccgaaaacaacttat 28677669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 37034031 - 37034096
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||||||| |||||||||||| | |||||| ||||||||| |||||  |||||| ||||    
T  37034031 ttttcataagatattatggagagcttatagaaataagttgaaaacaatttataaacatgtcttaag 37034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 15977993 - 15978045
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||||||||| |||||  |||||||||||||||| ||||    
T  15977993 gttttcataagctattttggagagattatgaaaataagctgaaaacaatttat 15978045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 16867747 - 16867799
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||    
T  16867747 gttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttat 16867799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 1939394 - 1939327
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| |||  |||||||||||||| |||||| |||||||| |||||   ||||||||||||    
T  1939394 gttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagt 1939327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 36852480 - 36852547
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| ||| ||||||||||||||| ||||| ||||||| |  |||||  ||||||||||||    
T  36852480 gttttcataagctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataagt 36852547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 43065512 - 43065445
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| |||  |||||||||||| | |||||||||||||||| ||||   ||||||||||||    
T  43065512 gttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagt 43065445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 43911061 - 43910994
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||| ||| ||| ||||| ||||| || ||||||||||||||||||||||   ||||||||||||    
T  43911061 gttttcaaaagctatcttggaaagcttgtgataataagctgaaaacaacttatgaacatgtcataagt 43910994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 18840810 - 18840856
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||| | ||||||||||||||| |||||| ||||||||||||||    
T  18840810 ataagatgtcttggagagcttatggaaataagatgaaaacaacttat 18840856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 24098122 - 24098156
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||||||||||| |||||||||||||||    
T  24098122 tattttggagagcttatggaaataagctgaaaaca 24098156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 29316837 - 29316771
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||| || ||| ||||||| ||||||| ||||||||||||| |||||||   |||||||||||    
T  29316837 gttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataag 29316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 41817193 - 41817242
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||||||||| |||||||||||||||| ||||   |||||||||||    
T  41817193 tggagagcttatggaaataagctgaaaacaaattatcaacatgtcataag 41817242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 1647250 - 1647310
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||| |||| | |||||||||||| ||||||||||||||| |||||   |||||||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaacagcttatgagcatgtcataag 1647310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 3227745 - 3227693
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||||||||| || ||  |||||||||||||||| ||||    
T  3227745 gttttcataagctattttggagagattttgaaaataagctgaaaacaatttat 3227693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 7283004 - 7283056
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| | |||||||||||||  ||||| ||||||||||||||    
T  7283004 gttttcataagctatgtgggagagcttatggatataagatgaaaacaacttat 7283056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 38078472 - 38078420
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  ||| |||| ||||||||||||    
T  38078472 gttttcataagctatcttggagagcttatgtaaatgagctcaaaacaacttat 38078420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 27754410 - 27754477
Alignment:
Q  207 tggttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||| |||||||||||    
T  27754410 tggttttcataagctattttggagagcttatgaaaataagctgaacgcaacttataatcatgtcataa 27754477  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 28769401 - 28769349
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  28769401 gttttcataagctattttggagagtttatggaaataagctgaaaacaacttat 28769349  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 30918122 - 30918173
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||| | | ||||||||||||||| |||||||||||||||||||||    
T  30918122 ttttcataagttttcttggagagcttatggaaataagctgaaaacaacttat 30918173  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 42215143 - 42215092
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||| ||| ||||||||||||||  |||||||||||||||||||||    
T  42215143 ttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 42215092  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 11795102 - 11795166
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||  ||||   |||||||||||    
T  11795102 tttcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgtcataag 11795166  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 44236885 - 44236834
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaactta 260  Q
    ||||||||||| ||| ||||||||||||||  ||||||||||||| ||||||    
T  44236885 gttttcataagctatattggagagcttatgaaaataagctgaaaataactta 44236834  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 3537001 - 3536955
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||| ||||||| ||||||| |||||||||||||||| ||||    
T  3537001 ataagatatcttggagaacttatggaaataagctgaaaacaatttat 3536955  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 4762517 - 4762571
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatac 263  Q
    ||||||||||| ||| ||| ||||||||||  |||||||||||||||| ||||||    
T  4762517 gttttcataagctatcttgaagagcttatgtaaataagctgaaaacaatttatac 4762571  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 11183570 - 11183620
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||||||| ||||||||||||||| ||||||  ||| ||||||||    
T  11183570 tggagagcttatggaaataagctgaaaacagcttatagacatatcataagt 11183620  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 25869311 - 25869261
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||| |||||| |||||||||||||||||||||   ||||||||||||    
T  25869311 tggagagtttatggaaataagctgaaaacaacttatggacatgtcataagt 25869261  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 26479794 - 26479860
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||  |||| |||||||||||||| |||| |||||||| ||||||||  |||| |||||||    
T  26479794 ttttcataacctattctggagagcttatggaaatacgctgaaaaaaacttatagacatgacataagt 26479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 41336707 - 41336654
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||||||||| ||| | |||||||||  || ||||||||||||||||||||||    
T  41336707 gttttcataagctatctaggagagcttgcggaaataagctgaaaacaacttata 41336654  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 43504759 - 43504812
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||| ||||| ||| ||||||| ||||||| ||||||||||||||| ||||||    
T  43504759 gtttttataagctatcttggagaacttatggaaataagctgaaaacagcttata 43504812  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 6864521 - 6864477
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaa 253  Q
    ||||||||||| |||||||||||||||  || |||||||||||||    
T  6864521 gttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 6950350 - 6950382
Alignment:
Q  229 agagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||||||||||||||||||    
T  6950350 agagcttatggaaataagctgaaaacaacttat 6950382  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 8062337 - 8062389
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| || ||||| |||||| ||||||||||||||| |||||    
T  8062337 gttttcataagctatcttagagagattatggaaataagctgaaaacatcttat 8062389  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 27028839 - 27028883
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaa 253  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||    
T  27028839 gttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 30277307 - 30277255
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  | ||||| |||||| |||||||||||||||||||||    
T  30277307 gttttcataagctatcctagagagtttatggaaataagctgaaaacaacttat 30277255  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 7785794 - 7785740
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  7785794 tattttggagagcttatggaaataagctgaaaacaacttatagacatgtcataag 7785740  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 20512704 - 20512652
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatac 263  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  20512704 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttatac 20512652  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 3155185 - 3155250
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||||| ||||||  ||||||||||||    
T  3155185 ttttcataagatatcctggagagct-atggaaataagctgaaaacagcttatagacatgtcataagt 3155250  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 281891 - 281843
Alignment:
Q  228 gagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||    
T  281891 gagagctcatggaaataagctgaaaacaacttatagacatgtcataagt 281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 2460206 - 2460146
Alignment:
Q  216 taagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||| |  ||||||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagt 2460146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 4420652 - 4420716
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||| |||| ||| ||||||||||||||| ||||||||||||||| |||||   ||||||||||    
T  4420652 ttttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 3202006 - 3201943
Alignment:
Q  212 ttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||| ||| ||||| | | ||||| ||||||||||||||||||||| | |||||||||||    
T  3202006 ttcataagctatcttggataacatatgggaataagctgaaaacaacttatgcgcatgtcataag 3201943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 6536975 - 6537022
Alignment:
Q  229 agagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||    
T  6536975 agagcttatggaaataagctgaaaacaacttatgaacatgtcataagt 6537022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 27909683 - 27909648
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||||||| |||||||||||||||||||||    
T  27909683 tggagagcttatggaaataagctgaaaacaacttat 27909648  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 2205652 - 2205610
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaa 251  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||    
T  2205652 gttttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 29274291 - 29274245
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    |||||||||||||||| ||| |||||||||||||| ||| |||||||    
T  29274291 gttttcataagatattgtggcgagcttatggtaatgagcagaaaaca 29274245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 33787807 - 33787761
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||| ||| ||||||||||||||| |||| ||||||||||    
T  33787807 gttttcataagttatcttggagagcttatggaaataggctgaaaaca 33787761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 12242772 - 12242705
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||||||||| ||  |||||||||||||    
T  12242772 gttttcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagt 12242705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37588422 - 37588370
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||| |||||    
T  37588422 gttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 38104917 - 38104866
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||||||| ||| || |||||||||||| ||||||||||||||||||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaacaacttata 38104866  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 11707063 - 11707128
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||||||||| ||| ||| ||||||| ||  ||||||||||||||||||||||  ||||||||||    
T  11707063 gttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 20028550 - 20028498
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatac 263  Q
    ||||||||| |||| || ||||||||| | |||||||||||||||||||||||    
T  20028550 tttcataagctattatgaagagcttatagaaataagctgaaaacaacttatac 20028498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 33533601 - 33533549
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||    
T  33533601 gttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttat 33533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37526261 - 37526209
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| | || |||||||||||||| ||||||||||||||| |||||    
T  37526261 gttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37611277 - 37611225
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||| ||||| ||||||||| |||||    
T  37611277 gttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37611225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37788007 - 37787955
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||| ||||| ||||||||| |||||    
T  37788007 gttttcataagctatcttggagagcttatggaaataacctgaaaacagcttat 37787955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 10272493 - 10272426
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||||  || |||||||| |||||  |||||||||||||||||||| |  ||||||||||||    
T  10272493 gttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagt 10272426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 6183455 - 6183497
Alignment:
Q  212 ttcataagatattttggagagcttatggtaataagctgaaaac 254  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  6183455 ttcataagctgttttggagagcttatggaaataagctgaaaac 6183497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 12521542 - 12521588
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||| ||||||| ||||||||||| ||||||||||||||| |||||    
T  12521542 ataagctattttgaagagcttatggaaataagctgaaaacagcttat 12521588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 1899187 - 1899228
Alignment:
Q  234 ttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||| ||||||||||||||||||||| | |||||||||||    
T  1899187 ttatggaaataagctgaaaacaacttatgcacatgtcataag 1899228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 12975358 - 12975406
Alignment:
Q  212 ttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||| ||| ||||||||||||||| |||||| ||||||||||||||    
T  12975358 ttcataagctatcttggagagcttatgg-aataagttgaaaacaacttat 12975406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 17368684 - 17368729
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaac 254  Q
    ||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  17368684 gttttcataagctatcttggagaggttatggaaataagctgaaaac 17368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 27565412 - 27565367
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaac 254  Q
    ||||| |||||||||| |||||||||||||  ||||||||||||||    
T  27565412 gttttaataagatattctggagagcttatgaaaataagctgaaaac 27565367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 28413343 - 28413294
Alignment:
Q  212 ttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||| ||| |||||||| |||||| ||||||||||||||| |||||    
T  28413343 ttcataagttatcttggagagtttatggaaataagctgaaaacagcttat 28413294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37690699 - 37690646
Alignment:
Q  209 gttttcataa-gatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||| | |||| |||||||||||||| ||||||||||||||| |||||    
T  37690699 gttttcataaagttattatggagagcttatggaaataagctgaaaacagcttat 37690646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 40590782 - 40590819
Alignment:
Q  225 ttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  40590782 ttggagagcttatggaaataagctcaaaacaacttata 40590819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 4014486 - 4014434
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||| ||||||  ||||||||||||||| |||||    
T  4014486 gttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttat 4014434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 7319070 - 7319018
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||| ||||||  |||||||||| ||||||||||    
T  7319070 gttttcataagctatcttggagaacttatgaaaataagctgagaacaacttat 7319018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 8651414 - 8651363
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| ||| |||||||||| |||| ||||||||||||||||    
T  8651414 gttttcataagctattctgg-gagcttatggaaatatgctgaaaacaacttat 8651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 15074811 - 15074759
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  |||| ||||||||| ||||||||||||||| |||||    
T  15074811 gttttcataagttatactggaaagcttatggaaataagctgaaaacagcttat 15074759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 18875369 - 18875421
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||| |||||||||  |||||||||||||| || ||| ||||||||||||||    
T  18875369 gttttaataagatatcctggagagcttatggaaacaagttgaaaacaacttat 18875421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 18906350 - 18906402
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||| | ||||||| | |||||||||||||||||||||    
T  18906350 gttttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttat 18906402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 19138762 - 19138714
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    |||||||||||||| |||||||||||||||| ||||   ||||||||||    
T  19138762 tggagagcttatggaaataagctgaaaacaatttatgtacatgtcataa 19138714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 18628605 - 18628555
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaactt 259  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  18628605 gttttcataagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 2592365 - 2592320
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaactta 260  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 53673720 - 53673668
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||||||||||    
T  53673720 gttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 53673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 35064863 - 35064916
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    |||||||||||||||  ||||||| |||||| |||||||||||||||| |||||    
T  35064863 gttttcataagatatcatggagagtttatggaaataagctgaaaacaatttata 35064916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 7694072 - 7694020
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  ||||||| |||||| |||||||||||||||||||||    
T  7694072 gttttcataagttatcctggagagtttatggaaataagctgaaaacaacttat 7694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11802542 - 11802594
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| |||||||||||||  ||||||||||||||| |||||    
T  11802542 gttttcataagctattatggagagcttatgagaataagctgaaaacagcttat 11802594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 17884076 - 17884128
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  ||| |||||||||||||||||    
T  17884076 gttttcataagctatattggagagcttatgaaaattagctgaaaacaacttat 17884128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 27123407 - 27123347
Alignment:
Q  216 taagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||| |  ||||||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagt 27123347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 5131295 - 5131260
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||||||| |||||||||||||||||||||    
T  5131295 tggagagcttatggaaataagctgaaaacaacttat 5131260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 14011242 - 14011293
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaactta 260  Q
    |||| |||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  14011242 gtttacataagctatcttggagagcttatggaaataagctgaaaacagctta 14011293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 825552 - 825506
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||| ||||||||||| ||||||  |||||||||||||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaaca 825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 23819097 - 23819163
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||| ||| ||| ||||||||| | |||||| ||||||||||||||   |||||||||||    
T  23819097 gttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataag 23819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 19304935 - 19305000
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||| ||||| |||||||||||| | |||| || ||||||||||||||||||   |||||||||||    
T  19304935 tttttataagctattttggagagttaatggaaacaagctgaaaacaacttatggacatgtcataag 19305000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 4798628 - 4798576
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  |||||||| |||||| |||||    
T  4798628 gttttcataagctatcttggagagcttatgcaaataagctcaaaacagcttat 4798576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 8468956 - 8469008
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| | |||||||||||  ||||| |||||||||||||||    
T  8468956 gttttcataagttattctagagagcttatgaaaataatctgaaaacaacttat 8469008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 29263378 - 29263430
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  || ||||||| ||| |||||||||||||||||||||    
T  29263378 gttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttat 29263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 33534219 - 33534179
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  33534219 tatttttgagagcttatgaaaataagctgaaaacaacttat 33534179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 46110211 - 46110263
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  | |||||||||| | |||||||||||||||||||||    
T  46110211 gttttcataagctatgattgagagcttatagaaataagctgaaaacaacttat 46110263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 44815353 - 44815299
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||    
T  44815353 tattttggagagcttatggaaataagctgaaaacaatttatacacatatcataag 44815299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 10199469 - 10199404
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||||| |||||| |||||||||||  |||||||||||||||||||||   |||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 12564561 - 12564509
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  12564561 gttttcataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 28077131 - 28077079
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  28077131 gttttcataagctattttagagagcttattgaaataagctgaaaacaacttat 28077079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 30371156 - 30371208
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||||| |||||||||||| ||| | |||||||||||||||||||||    
T  30371156 gttttcataagacattttggagagcgtattgaaataagctgaaaacaacttat 30371208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 11893653 - 11893603
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||| ||||||| |||| |||||| |||||||||||||||||||||    
T  11893653 tttcataagctattttgaagagtttatggaaataagctgaaaacaacttat 11893603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 37593744 - 37593679
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||| ||||||| ||||||||||  ||||||||||||||| |||||   ||||||||||||    
T  37593744 tttcataagctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagt 37593679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 16322857 - 16322909
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||| | ||||||| ||||||||||| |||||||| ||||||||||||    
T  16322857 gttttcataggctattttgaagagcttatggaaataagctaaaaacaacttat 16322909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 47598483 - 47598431
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  |||||||||||||| || ||||||||||||||||||    
T  47598483 gttttcataagctatcctggagagcttatggcaacaagctgaaaacaacttat 47598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 4549260 - 4549303
Alignment:
Q  231 agcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||    
T  4549260 agcttatggaaataagctgaaaacaacttatagacatgtcataa 4549303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 14630027 - 14629976
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||| ||| |||||||  |||||| |||||||||||||||||||||    
T  14630027 ttttcataagctatcttggagactttatggaaataagctgaaaacaacttat 14629976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 35590952 - 35590905
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaact 258  Q
    ||||||||| |||  |||||||||||||| ||||||||||||||||||    
T  35590952 tttcataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 1565585 - 1565531
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||||||||| |||  ||||||||||||||| ||||| | |||||||||||    
T  1565585 tattttggagagctcatgaaaataagctgaaaacagcttatgcacatgtcataag 1565531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 6292513 - 6292567
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||||||||||  ||||||||||||||| |||||   |||||||||||    
T  6292513 tattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 6292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 26916215 - 26916261
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctggaaacaacttat 26916261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 27140486 - 27140552
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||| ||||| |||  |||||||||||||  |||||||||||||||||||||   |||||||||||    
T  27140486 gtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataag 27140552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 27963432 - 27963366
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||| |||| ||||||||||||   |||||||| ||||||||||||   |||||||||||    
T  27963432 gttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataag 27963366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 46252739 - 46252677
Alignment:
Q  214 cataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||| ||| ||||||||||||||  ||||| |||||||||||||||   ||||||||||||    
T  46252739 cataagctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagt 46252677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 49365981 - 49365935
Alignment:
Q  78 gctctatttggataaacaccttagttaagcgtttagagcataaacgt 124  Q
    ||||| |||||||||||| |||||||||||| ||| |||||||||||    
T  49365981 gctctgtttggataaacaacttagttaagcgcttatagcataaacgt 49365935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 7137060 - 7137008
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||| ||||||  ||||||||||||| |||||||    
T  7137060 gttttcataagctatcttggagaacttatgaaaataagctgaaaataacttat 7137008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 15558225 - 15558277
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||||||||  | |||| ||||| | |||||||||||||||||||||    
T  15558225 gttttcataagatatcctagagaacttatagaaataagctgaaaacaacttat 15558277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 23902129 - 23902077
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||| ||| ||| || |||||||||||| | |||||||||||||||||||    
T  23902129 gttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaacttat 23902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 28689508 - 28689448
Alignment:
Q  215 ataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||| ||| ||||| ||||||||  |||||||||||||||||||||   |||||||||||    
T  28689508 ataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataag 28689448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 34290244 - 34290296
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||| ||| ||||||  |||||||||||||||||||||    
T  34290244 gttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttat 34290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 35179147 - 35179199
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| |||||| ||||||  ||||||||||||||| |||||    
T  35179147 gttttcataagttattatggagaacttatgaaaataagctgaaaacagcttat 35179199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 48748357 - 48748325
Alignment:
Q  229 agagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||||||||||||||||||||    
T  48748357 agagcttatggaaataagctgaaaacaacttat 48748325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 7244688 - 7244753
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||||||||||   ||||||||||    
T  7244688 gttttcataagctatattggagagcttatgaaaataagctgaaaacaacttatgagcatgtcataa 7244753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 46082056 - 46082111
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||| |||||||||||||  |||||||||||||||||||||  |||||||||||||    
T  46082056 tattctggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagt 46082111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 12234932 - 12234884
Alignment:
Q  228 gagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||||| ||||||||||||||| ||||||  ||||||||||||    
T  12234932 gagagcttatggaaataagctgaaaacagcttatagacatgtcataagt 12234884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 24363663 - 24363611
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||  ||||||| |||||| |||||||||||||||||||||    
T  24363663 gttttcataagctatcctggagaggttatggaaataagctgaaaacaacttat 24363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 33646022 - 33645956
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| ||| | ||||||||||||| ||||| || |||||||||||||  ||||||||||||    
T  33646022 gttttcataagctatct-ggagagcttatggaaataacctaaaaacaacttatagacatgtcataagt 33645956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 25596042 - 25596092
Alignment:
Q  210 ttttcataagatattttggagagcttatggtaataagctgaaaacaactta 260  Q
    |||||||||| ||| ||||||||||||||  |||||| |||||||||||||    
T  25596042 ttttcataagctatcttggagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 24909672 - 24909717
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaac 254  Q
    |||||||||||||||| |||||||||| ||| |||| |||||||||    
T  24909672 gttttcataagatattgtggagagcttgtggaaatatgctgaaaac 24909717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 39505964 - 39506008
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaa 253  Q
    ||||||||||| |||| ||||||| |||||| |||||||||||||    
T  39505964 gttttcataagctattctggagagtttatggaaataagctgaaaa 39506008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 44821967 - 44822019
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| |||| |||||| ||||||  |||||| ||||||||||||||    
T  44821967 gttttcataagctattctggagaacttatgaaaataagttgaaaacaacttat 44822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 47559663 - 47559611
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||||||||||| ||||||  ||| ||| |||||||||||||    
T  47559663 gttttcataagttattttggagaacttatgaaaatgagccgaaaacaacttat 47559611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 33687 - 33635
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatac 263  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  33687 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttatac 33635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 13371127 - 13371179
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttatac 263  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  13371127 tttcataagctattatgaagagcttatggaaataagctgaaaacaacttatac 13371179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 37273142 - 37273209
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    ||||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||   ||||||||||||    
T  37273142 gttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagt 37273209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 41633368 - 41633431
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcat 272  Q
    |||||||| || ||||||||||||||||||  |||||||||||||||| |||||  ||||||||    
T  41633368 gttttcatcagctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat 41633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 5292571 - 5292529
Alignment:
Q  220 atattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  5292571 atattatggagagcttatggaaataagctgaaaacaacttata 5292529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 14548783 - 14548737
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||    
T  14548783 gttttcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 44295537 - 44295583
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||    
T  44295537 gttttcataagatatatcggagagcttatggaaataagctgaaaaca 44295583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 23793594 - 23793645
Alignment:
Q  211 tttcataagatattttggagagcttatggtaataagctgaaaacaacttata 262  Q
    ||||||||| ||| ||||| ||||||| | ||||||||||||||||||||||    
T  23793594 tttcataagctatcttggaaagcttatagaaataagctgaaaacaacttata 23793645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 21862219 - 21862185
Alignment:
Q  227 ggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||||| |||||||||||||||||||||    
T  21862219 ggagagcttatggaaataagctgaaaacaacttat 21862185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 24887345 - 24887299
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaaca 255  Q
    ||||||||||| |||  |||||||||||||| |||||||||||||||    
T  24887345 gttttcataagctatcctggagagcttatgggaataagctgaaaaca 24887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 54180842 - 54180776
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    ||||||||||| |||| ||||||||||||   |||||||| ||||||||||||   |||||||||||    
T  54180842 gttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataag 54180776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 37825147 - 37825196
Alignment:
Q  226 tggagagcttatggtaataagctgaaaacaacttatactcatgtcataag 275  Q
    |||||||||||||| ||||| |||||||||||||||   |||||||||||    
T  37825147 tggagagcttatggaaataacctgaaaacaacttatggacatgtcataag 37825196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 45432981 - 45432936
Alignment:
Q  229 agagcttatggtaataagctgaaaacaacttatactcatgtcataa 274  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||    
T  45432981 agagcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 2719476 - 2719528
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||| ||||||  |||||||||| ||||||||||    
T  2719476 gttttcataagctatcttggagaacttatgaaaataagctgagaacaacttat 2719528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 20669180 - 20669232
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| ||||||||||||||  ||||||| ||||||| |||||    
T  20669180 gttttcataagctatcttggagagcttatgtaaataagcggaaaacagcttat 20669232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 32582752 - 32582796
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaa 253  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||||||    
T  32582752 gttttcataagctattttggagaacttatggaaataagttgaaaa 32582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 40665437 - 40665489
Alignment:
Q  209 gttttcataagatattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    ||||||||||| ||| |||||||||||||   ||||||||||||||| |||||    
T  40665437 gttttcataagttatcttggagagcttataaaaataagctgaaaacagcttat 40665489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 43115083 - 43115131
Alignment:
Q  228 gagagcttatggtaataagctgaaaacaacttatactcatgtcataagt 276  Q
    |||||||||||| |||||||||||||||| ||||   ||||||||||||    
T  43115083 gagagcttatggaaataagctgaaaacaagttatggacatgtcataagt 43115131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 48991871 - 48991911
Alignment:
Q  221 tattttggagagcttatggtaataagctgaaaacaacttat 261  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  48991871 tattttggagagattatgaaaataagctgaaaacaacttat 48991911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 6538 - 6492
Alignment:
Q  227 ggagagcttatggtaataagctgaaaacaacttatactcatgtcata 273  Q
    ||||||||||||| ||||| ||||||||||||||||  |||||||||    
T  6538 ggagagcttatggaaataaactgaaaacaacttatagacatgtcata 6492  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 13558 - 13512
Alignment:
Q  227 ggagagcttatggtaataagctgaaaacaacttatactcatgtcata 273  Q
    ||||||||||||| ||||| ||||||||||||||||  |||||||||    
T  13558 ggagagcttatggaaataaactgaaaacaacttatagacatgtcata 13512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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