View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6014_low_5 (Length: 504)
Name: NF6014_low_5
Description: NF6014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6014_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 54720907 - 54721378
Alignment:
| Q |
19 |
ctatttatacctcatgtaacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtca |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54720907 |
ctatttatacctcatgtaacaatcggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtca |
54721006 |
T |
|
| Q |
119 |
aaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctattttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54721007 |
aaatattactttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtgttataaaatgaagtgatatgaagcctattttat |
54721106 |
T |
|
| Q |
219 |
tccatgcaaaacaataacgataggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtcctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721107 |
tccatgcaaaacaataacgataggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtcctt |
54721206 |
T |
|
| Q |
319 |
gctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagctggtactctgaatagttctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
54721207 |
gctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagttggtactctgaatagtgctg |
54721306 |
T |
|
| Q |
419 |
ctgctgaggagggtgatggaagagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgatg |
493 |
Q |
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| T |
54721307 |
ctgct---gagggtgatggaagagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgatg |
54721378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 45 - 493
Target Start/End: Original strand, 54714013 - 54714449
Alignment:
| Q |
45 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaaagcca |
144 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
54714013 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattattttctcaagcaaagcca |
54714112 |
T |
|
| Q |
145 |
cattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaa |
244 |
Q |
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|||||||||| ||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714113 |
cattaattcacttattttttcgtttaaggaaaaatgttgtgttataaattgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaa |
54714212 |
T |
|
| Q |
245 |
ggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggcta |
344 |
Q |
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| ||||||| |||||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |||| |||||||| |
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| T |
54714213 |
gaaaataaaaatactgagtgatattgtacactatggcaaaaac---------ttcaattcttctagttgtccttgctgtggcattatttctcaatggcta |
54714303 |
T |
|
| Q |
345 |
tagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagtt |
444 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||| |
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| T |
54714304 |
tagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtattctgaatag---tgctgctgccgggggtgatggaagagtt |
54714400 |
T |
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| Q |
445 |
aatcaattactagtgaaaga---tgaagctgatcagcttcatgatgatgatg |
493 |
Q |
| |
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||||| || |||||||| |||||||||||||| | |||||||||||| |
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| T |
54714401 |
aatca---accggtgaaagatattgaagctgatcagcatgatgatgatgatg |
54714449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 54680285 - 54680457
Alignment:
| Q |
35 |
taacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattact---ttc |
131 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
54680285 |
taacaattggccggtcaattaattaaccatcatatttaacgccatgc----ttcccacacggttaaactagcttacttttgtcaaaatattactaatttc |
54680380 |
T |
|
| Q |
132 |
tcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaag |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||| |||| |
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| T |
54680381 |
tcacgcaaagccacactaattcatttattttttcgtttatggaaaaatgtggtgttataaattgaagtgataagaag |
54680457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 54728077 - 54728205
Alignment:
| Q |
265 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
364 |
Q |
| |
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|||||| |||||||| |||||| | ||||| |||||||||||| |||||||||| ||||||||| || ||||||||||||||| ||||| ||||| |
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| T |
54728077 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcatt-tttgtgaatggctatagtg---ttgctgcgggtg |
54728170 |
T |
|
| Q |
365 |
aagtaagagctaatcaactggtgaaagatgaagct |
399 |
Q |
| |
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| ||||| ||||||||||| ||||||||||||| |
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| T |
54728171 |
tgggaagagataatcaactggagaaagatgaagct |
54728205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 54726646 - 54726731
Alignment:
| Q |
67 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
152 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| || |||| ||||| ||||||||| ||||| |||||||| |||||||||| |
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| T |
54726646 |
tatttgacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctaacgcaaagtcacattaatt |
54726731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 269 - 493
Target Start/End: Original strand, 5297310 - 5297531
Alignment:
| Q |
269 |
tgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297310 |
tgtacactatggcaaaaaccagtactgtttcacttgttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
5297409 |
T |
|
| Q |
369 |
aagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagttaatcaattactagtgaaagatgaa |
468 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297410 |
aagagctaatcaactggtgaaagatgaatctggtactctgaatagtgctgctgct---gagggtgatggaagagttaatcaattactagtgaaagatgaa |
5297506 |
T |
|
| Q |
469 |
gctgatcagcttcatgatgatgatg |
493 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5297507 |
gctgatcagcttcatgatgatgatg |
5297531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 5302739 - 5302868
Alignment:
| Q |
265 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
364 |
Q |
| |
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|||||| |||||||| |||||| | ||||| |||||||||||| |||||||||| |||||||||| || ||||||||||||||| |||||| ||||| |
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| T |
5302739 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcattatttgtgaatggctatagtg---ctgctgtgggtg |
5302833 |
T |
|
| Q |
365 |
aagtaagagctaatcaactggtgaaagatgaagct |
399 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||| |
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|
| T |
5302834 |
tgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 5302512 - 5302597
Alignment:
| Q |
67 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
152 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||| |||||||||| |
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| T |
5302512 |
tattttacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctcacgcaaagtcacattaatt |
5302597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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